Basic Information
Locus ID:
nbisL1-mrna-2600
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 23873966 | 23877947 | + | nbisL1-mrna-2600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 114,737.49 Da | 49.86 | 67.57 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 185 | 268 | 5.26734E-27 | - |
| Pfam | PF00855 | PWWP domain | 182 | 267 | 5.1E-20 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 181 | 282 | 1.32E-27 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 172 | 277 | 5.4E-28 | - |
| SMART | SM00293 | PWWP_4 | 182 | 243 | 1.5E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 184 | 245 | 15.035706 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 841 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40340.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_015578174.2 | PWWP domain-containing protein 3 isoform X2 [Ricinus communis] | 0 |
| Q9FNE4 | PWWP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PDP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JFT2 | Uncharacterized protein LOC8289805 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology