Basic Information
Locus ID:
nbisL1-mrna-25959
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 8676794 | 8678978 | - | nbisL1-mrna-25959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 27,086.15 Da | 52.58 | 82.41 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 77 | 129 | 2.0E-6 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 74 | 132 | 1.24E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 184 | 2.5E-10 | IPR013083 |
| SMART | SM00744 | ringv_2 | 76 | 130 | 7.6E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 69 | 136 | 14.859005 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_012088157.1 | E3 ubiquitin-protein ligase MARCHF8 [Jatropha curcas] | 0 |
| TrEMBL | A0A8X7ZD76 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_029449 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology