Basic Information
Locus ID:
nbisL1-mrna-25808
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 7243349 | 7248589 | + | nbisL1-mrna-25808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 48,724.07 Da | 48.52 | 71.38 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 279 | 362 | 2.85745E-30 | - |
| CDD | cd12619 | RRM2_PUB1 | 159 | 233 | 1.36861E-50 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 299 | 356 | 5.1E-5 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 230 | 9.8E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 45 | 79 | 1.0E-4 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 267 | 366 | 8.42E-17 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 31 | 151 | 5.24E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 151 | 241 | 5.51E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 36 | 152 | 1.8E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 153 | 251 | 6.7E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 256 | 367 | 1.7E-19 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 159 | 232 | 7.9E-5 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 280 | 358 | 3.5E-10 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 44 | 143 | 2.3E-9 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 159 | 232 | 3.1E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 279 | 362 | 13.703047 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 43 | 147 | 13.668936 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 236 | 17.335848 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_002516242.3 | - | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M1J5 | Uncharacterized protein MANES_16G093200 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology