Basic Information
Locus ID:
nbisL1-mrna-258
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
DNA-(Apurinic or apyrimidinic site) lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 2110721 | 2111821 | - | nbisL1-mrna-258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 25,752.33 Da | 52.58 | 78.10 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 152 | 196 | 1.07303E-14 | - |
| Pfam | PF13639 | Ring finger domain | 152 | 196 | 2.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 199 | 3.81E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 200 | 2.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 153 | 195 | 3.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 196 | 11.987676 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22670.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_052310636.1 | RING-H2 finger protein ATL39-like [Populus trichocarpa] | 0 |
| F4I2Y3 | Receptor homology region, transmembrane domain- and RING domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=RMR3 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K1ZPY0 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G057300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.104 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-258 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14319 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5898 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.484 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006795 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19390 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2421 |
| Salicaceae | Populus euphratica | 2 | populus_peu14130, populus_peu23263 |