Basic Information
Locus ID:
nbisL1-mrna-25759
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 6837157 | 6838694 | - | nbisL1-mrna-25759 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 30,253.28 Da | 37.93 | 95.59 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 146 | 227 | 9.91893E-30 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 11 | 159 | 2.9E-36 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 55 | 251 | 1.59E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 146 | 2.7E-17 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 147 | 268 | 5.5E-45 | IPR027417 |
| SMART | SM00490 | helicmild6 | 150 | 231 | 3.0E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 5 | 192 | 4.5E-40 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 128 | 270 | 22.404716 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 17 | 185 | 23.618313 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 133 | 141 | - | IPR000629 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.4 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_044463479.1 | - | 0 |
| Q40467 | Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6PF47 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology