Basic Information
Locus ID:
nbisL1-mrna-25648
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
EFTS
Description:
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5522804 | 5529255 | - | nbisL1-mrna-25648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 140,293.56 Da | 46.70 | 76.19 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00164 | S1_like | 273 | 333 | 9.61615E-9 | - |
| CDD | cd14275 | UBA_EF-Ts | 1099 | 1135 | 3.59835E-18 | - |
| CDD | cd14275 | UBA_EF-Ts | 858 | 894 | 9.8002E-17 | - |
| Pfam | PF00889 | Elongation factor TS | 907 | 1049 | 4.0E-30 | IPR014039 |
| Pfam | PF00889 | Elongation factor TS | 1147 | 1290 | 7.4E-30 | IPR014039 |
| Pfam | PF00575 | S1 RNA binding domain | 152 | 222 | 1.0E-14 | IPR003029 |
| Pfam | PF00575 | S1 RNA binding domain | 268 | 331 | 2.4E-8 | IPR003029 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 1149 | 1290 | 2.75E-44 | IPR036402 |
| SUPERFAMILY | SSF46934 | UBA-like | 1096 | 1147 | 8.02E-18 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 855 | 907 | 4.25E-17 | IPR009060 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 147 | 224 | 2.09E-20 | IPR012340 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 908 | 1049 | 4.06E-44 | IPR036402 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 262 | 347 | 2.16E-12 | IPR012340 |
| Gene3D | G3DSA:1.10.286.20 | - | 1204 | 1248 | 4.0E-48 | - |
| Gene3D | G3DSA:1.10.286.20 | - | 963 | 1007 | 2.4E-48 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 143 | 228 | 2.3E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 853 | 906 | 1.0E-23 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 265 | 347 | 1.1E-14 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 1152 | 1289 | 4.0E-48 | IPR036402 |
| Gene3D | G3DSA:1.10.8.10 | - | 1093 | 1148 | 2.0E-24 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 911 | 1048 | 2.4E-48 | IPR036402 |
| SMART | SM00316 | S1_6 | 268 | 339 | 6.7E-14 | IPR022967 |
| SMART | SM00316 | S1_6 | 151 | 222 | 5.7E-21 | IPR022967 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 854 | 947 | 4.2E-33 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 942 | 1066 | 1.3E-31 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 1095 | 1195 | 3.8E-36 | IPR001816 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 153 | 222 | 21.213564 | IPR003029 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 270 | 339 | 18.108757 | IPR003029 |
| ProSitePatterns | PS01127 | Elongation factor Ts signature 2. | 927 | 937 | - | IPR018101 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 1104 | 1119 | - | IPR018101 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 863 | 878 | - | IPR018101 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 1094 | 1301 | 36.817345 | IPR001816 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 853 | 1066 | 40.8162 | IPR001816 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 725 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29060.1 | elongation factor Ts family protein. | 0 |
| RefSeq | XP_048227509.1 | polyprotein of EF-Ts, chloroplastic [Ricinus communis] | 0 |
| Q9SZD6 | Polyprotein of EF-Ts, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETs PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1QV87 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15501, jg33837 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9100 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25014, Sbi_jg8868 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007769, GOSA_00007770 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42256, Sgl47032 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009631, gene:ENSEOMG00000033644 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019800, CQ.Regalona.r1.8BG0022580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256850 |
| Apiaceae | Apium graveolens | 1 | Ag10G01520 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007630 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702876 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2252.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G02403, Ftri8G29592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024316m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g083910.2N, BniB05g007220.2N, BniB05g008470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0078s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g16210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003868 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29558, Lb6G30757 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3682, BH05.3703, CH05.3888 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393080, gene-QOZ80_5BG0441360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0444900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001962 |
| Poaceae | Oryza coarctata | 2 | Oco23G007930, Oco24G007530 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g35630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G089800, gene-BS78_K022400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703772 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G016580, Chr19G009600, Chr27G006830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G182200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG015330, gene_TRIDC5BG016440 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G093200.1, TraesCS5B02G099300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb078330_P001, Zm00001eb091120_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30276 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25943 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2494, evm.TU.LG10.1532 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g07330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1927 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17578 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10199, nbisL1-mrna-21839, nbisL1-mrna-4696 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1099 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14783 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1210 |
| Salicaceae | Populus euphratica | 1 | populus_peu21951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603424 |
| Solanaceae | Solanum chilense | 1 | SOLCI006671800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025533 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11808, gene_9320 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1437 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02340.v3.1 |