Basic Information
Locus ID:
nbisL1-mrna-25645
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5462974 | 5470754 | - | nbisL1-mrna-25645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 147,882.56 Da | 47.13 | 97.07 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 381 | 423 | 5.48912E-20 | - |
| Pfam | PF04564 | U-box domain | 378 | 448 | 2.6E-16 | IPR003613 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1080 | 1115 | 0.0022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1035 | 1326 | 1.06E-34 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 543 | 833 | 1.32E-10 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 374 | 450 | 1.84E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 366 | 459 | 4.8E-25 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 1007 | 1145 | 5.4E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1146 | 1327 | 5.7E-19 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 497 | 880 | 1.2E-11 | IPR011989 |
| SMART | SM00320 | WD40_4 | 1285 | 1325 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1157 | 1194 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1197 | 1243 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1077 | 1116 | 3.6E-6 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 380 | 444 | 5.2E-27 | IPR003613 |
| SMART | SM00320 | WD40_4 | 1035 | 1072 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1246 | 1282 | 4.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1293 | 1327 | 9.256512 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1084 | 1115 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1084 | 1115 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1293 | 1327 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 376 | 451 | 36.472588 | IPR003613 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1312 | 1326 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 361 | - | - |
| Coils | Coil | Coil | 864 | 884 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 0 |
| RefSeq | XP_021675290.1 | putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Hevea brasiliensis] | 0 |
| D1FP53 | Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula OX=3880 GN=LIN PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6LUK5 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_024716 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg11768, jg11769, jg11770, jg11771, jg31633, jg31634 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30049320, pistato.v30256780 |
| Apiaceae | Apium graveolens | 3 | Ag2G02459, Ag3G02527, Ag8G00225 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G011900, COCNU_07G002000 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702597, gene-LOC103706139 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1751.V1.1, AsparagusV1_03.2268.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri4G07535, Ftri7G18227, Ftri8G01620 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0877, Ceq06G1516 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0956, Cgl06G1574 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-141, nbisL1-mrna-8648 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.710, evm.TU.LG07.1111 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003863, Pov_00020671 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.91, BH01.509, BH02.80, CH02.102 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0000840, gene-QOZ80_1BG0049330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_051444, gene-QYE76_051560, gene-QYE76_051566 |
| Poaceae | Oryza coarctata | 2 | Oco01G005770, Oco02G005870 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g12930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G006500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204871 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr21G016220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G274000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020830, gene_TRIDC3BG031130 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G154900.1, TraesCS3B02G181200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb119290_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-24273, nbis-gene-24274, nbis-gene-32721 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7183, Zma_g9505 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.437, evm.TU.Scaffold_4_RagTag.1931 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13099, nbisL1-mrna-16388, nbisL1-mrna-25645 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12295, nbisL1-mrna-6585 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13044, nbisL1-mrna-13045, nbisL1-mrna-16830 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000018l.158, add.evm.TU.utg000033l.95 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000143, Maker00011993, Maker00014879 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20232, nbisL1-mrna-23194 |
| Salicaceae | Populus euphratica | 5 | populus_peu15357, populus_peu21947, populus_peu33000 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603413, gene-LOC132622109 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107017250, gene-LOC107025502, gene-LOC114077896 |