Basic Information
Locus ID:
nbisL1-mrna-25638
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5432963 | 5437546 | + | nbisL1-mrna-25638 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 97,827.96 Da | 44.23 | 79.58 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 187 | 248 | 1.1E-14 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 372 | 518 | 2.9E-53 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 560 | 784 | 1.2E-71 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 577 | 751 | 2.5E-186 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 370 | 787 | 2.5E-186 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | 9.667924 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 795 | 814 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021641394.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 [Hevea brasiliensis] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YJC8 | ribonuclease P OS=Populus deltoides OX=3696 GN=H0E87_012495 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology