halophFGD

Basic Information

Locus ID: nbisL1-mrna-25631

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	5315848	5320705	-	nbisL1-mrna-25631

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.06	68,979.07 Da	41.28	84.67	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	336	384	1.3E-11	IPR002885
Pfam	PF13041	PPR repeat family	196	244	7.4E-13	IPR002885
Pfam	PF13041	PPR repeat family	406	453	2.1E-12	IPR002885
Pfam	PF13812	Pentatricopeptide repeat domain	61	102	0.0094	IPR002885
Pfam	PF13041	PPR repeat family	125	172	5.7E-16	IPR002885
Pfam	PF13041	PPR repeat family	270	313	9.8E-8	IPR002885
SUPERFAMILY	SSF81901	HCP-like	135	299	4.71E-8	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	37	172	2.5E-31	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	400	475	3.4E-17	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	173	282	3.8E-35	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	283	399	1.8E-28	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	339	373	3.2E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	200	233	3.4E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	129	161	1.4E-10	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	234	268	1.5E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	163	197	6.0E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	62	91	0.0018	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	409	442	1.2E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	375	408	5.4E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	270	302	3.8E-7	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	337	371	11.750571	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	442	476	10.117337	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	91	125	8.61564	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	372	406	9.88715	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	267	301	11.575191	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	197	231	11.947875	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	161	196	10.840783	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	126	160	14.403206	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	232	266	11.772493	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	407	441	11.662881	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17710 (pentatricopeptide repeat domain-containing protein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G21222.1	protein kinase family protein.
RefSeq	XP_021641429.1	pentatricopeptide repeat-containing protein At5g25630-like isoform X1 [Hevea brasiliensis]
Swiss-Prot	Q8S9D1	Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1
TrEMBL	A0A2P2J6C0	Uncharacterized protein MANES_03G021600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg3824, jg7860
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10714, gene_8166
Amaranthaceae	Atriplex hortensis	2	Ah014544, Ah034904
Amaranthaceae	Beta vulgaris	4	BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae	Salicornia europaea	2	Seu_jg16657, Seu_jg19774
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007807
Amaranthaceae	Suaeda glauca	5	Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae	Pistacia vera	2	pistato.v30253400, pistato.v30256590
Apiaceae	Apium graveolens	2	Ag10G01538, Ag7G00293
Arecaceae	Cocos nucifera	1	COCNU_03G012070
Arecaceae	Phoenix dactylifera	1	gene-LOC103710907
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... AsparagusV1_07.417.V1.1
Asteraceae	Flaveria trinervia	1	Ftri3G24253
Brassicaceae	Arabidopsis thaliana	2	AT5G21222.1, AT5G25630.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae	Brassica nigra	3	BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2119, Ceq06G1498
Casuarinaceae	Casuarina glauca	3	Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g15860
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae	Plantago ovata	1	Pov_00003850
Plumbaginaceae	Limonium bicolor	2	Lb7G34995, Lb7G35002
Poaceae	Echinochloa crus-galli	3	AH06.2290, BH07.3959, CH06.2313
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0248630.1
Poaceae	Lolium multiflorum	2	gene-QYE76_051474, gene-QYE76_051482
Poaceae	Oryza coarctata	2	Oco01G005680, Oco02G005770
Poaceae	Paspalum vaginatum	1	gene-BS78_10G191200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204886, Pt_Chr0205057
Poaceae	Sporobolus alterniflorus	3	Chr07G014820, Chr21G007420, Chr31G007880
Poaceae	Thinopyrum elongatum	1	Tel3E01G276300
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae	Triticum aestivum	3	TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... TraesCS3D02G160600.2
Poaceae	Zea mays	1	Zm00001eb315460_P002
Poaceae	Zoysia macrostachya	1	Zma_g29714
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... evm.TU.LG23.1077
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60417.2, evm.TU.60418.2 ... evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25631
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14993
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4712
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00001456
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae	Populus euphratica	4	populus_peu04868, populus_peu12782, populus_peu21928 ... populus_peu38110
Solanaceae	Lycium barbarum	2	gene-LOC132603462, gene-LOC132635663
Solanaceae	Solanum chilense	2	SOLCI000411300, SOLCI005497300
Solanaceae	Solanum pennellii	2	gene-LOC107026118, gene-LOC107028521
Tamaricaceae	Reaumuria soongarica	2	STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae	Tamarix chinensis	2	TC02G0334, TC12G1292
Zosteraceae	Zostera marina	1	Zosma05g13580.v3.1