Basic Information
Locus ID:
nbisL1-mrna-25573
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 4677541 | 4678928 | + | nbisL1-mrna-25573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 40,831.62 Da | 28.59 | 78.29 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 27 | 366 | 6.02139E-139 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 32 | 360 | 9.4E-73 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 34 | 363 | 9.65E-60 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 263 | 332 | 2.49E-13 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 262 | 331 | 1.7E-102 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 43 | 362 | 1.7E-102 | - |
| SMART | SM00636 | 2g34 | 29 | 360 | 1.9E-90 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 29 | 374 | 62.826027 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YIX8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology