Basic Information
Locus ID:
nbisL1-mrna-25510
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 3676808 | 3678587 | - | nbisL1-mrna-25510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 52,314.78 Da | 68.73 | 70.78 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 155 | 198 | 4.29495E-18 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 6.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 203 | 1.09E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 205 | 4.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 4.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.577796 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 238 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021634683.1 | RING-H2 finger protein ATL43 [Manihot esculenta] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2C9UKH8 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G063700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology