Basic Information
Locus ID:
nbisL1-mrna-25505
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 3641456 | 3645121 | + | nbisL1-mrna-25505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 91,031.69 Da | 39.05 | 100.25 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 326 | 364 | 0.0057 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 115 | 150 | 2.7E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 369 | 427 | 4.4E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 64 | 3.5E-4 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 301 | 2.99E-41 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 560 | 790 | 7.92E-21 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 328 | 437 | 7.56E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 547 | 622 | 1.9E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 322 | 2.7E-67 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 326 | 450 | 1.3E-32 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 675 | 806 | 7.8E-19 | - |
| SMART | SM00369 | LRR_typ_2 | 90 | 112 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 113 | 136 | 1.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 390 | 413 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 137 | 163 | 86.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 187 | 211 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 414 | 436 | 94.0 | IPR003591 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 590 | 612 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 852 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002308106.2 | receptor-like kinase TMK4 [Populus trichocarpa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YMX3 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_013198 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology