halophFGD

Basic Information

Locus ID: nbisL1-mrna-25457

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Belongs to the glucose-6-phosphate 1-epimerase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	3096653	3101729	+	nbisL1-mrna-25457

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.39	35,503.82 Da	32.03	82.97	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09020	D-hex-6-P-epi_like	23	297	1.19292E-129	IPR025532
Pfam	PF01263	Aldose 1-epimerase	21	296	2.9E-69	IPR008183
SUPERFAMILY	SSF74650	Galactose mutarotase-like	17	296	1.0E-71	IPR011013
Gene3D	G3DSA:2.70.98.10	-	18	303	2.9E-102	IPR014718
PIRSF	PIRSF016020	PHexose_mutarotase	6	303	2.2E-70	IPR025532

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0016853 (isomerase activity) GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K01792 (glucose-6-phosphate 1-epimerase [EC:5.1.3.15])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments)

Reaction:

R02739 (alpha-D-Glucose 6-phosphate <=> beta-D-Glucose 6-phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G57330.1	Galactose mutarotase-like superfamily protein.
RefSeq	XP_021665923.1	putative glucose-6-phosphate 1-epimerase [Hevea brasiliensis]
Swiss-Prot	Q40784	Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1
TrEMBL	A0A2P2KNK0	glucose-6-phosphate 1-epimerase OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg17764, jg19863, jg23529, jg26905, jg29420, jg30465, jg4108 ... jg37042, jg40398
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10802, gene_1658, gene_17494, gene_1784
Amaranthaceae	Atriplex hortensis	4	Ah004506, Ah014756, Ah022899, Ah037209
Amaranthaceae	Beta vulgaris	4	BVRB_1g003620, BVRB_5g099470, BVRB_6g143920, BVRB_8g198340
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg23985, Sbi_jg25156, Sbi_jg4010, Sbi_jg42040 ... Sbi_jg48097, Sbi_jg49217, Sbi_jg7809, Sbi_jg8998
Amaranthaceae	Salicornia europaea	4	Seu_jg12219, Seu_jg19594, Seu_jg27458, Seu_jg6023
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00000536, GOSA_00001097, GOSA_00007644, GOSA_00008876
Amaranthaceae	Suaeda glauca	9	Sgl10977, Sgl11083, Sgl16376, Sgl31622, Sgl36933, Sgl42434 ... Sgl47163, Sgl52148, Sgl57421
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000002257, gene:ENSEOMG00000002330 ... gene:ENSEOMG00000005453, gene:ENSEOMG00000011572, gene:ENSEOMG00000013687, gene:ENSEOMG00000022220, gene:ENSEOMG00000025677, gene:ENSEOMG00000026701, gene:ENSEOMG00000033199, gene:ENSEOMG00000034610, gene:ENSEOMG00000035617, gene:ENSEOMG00000047870, gene:ENSEOMG00000050224
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2BG0025770, CQ.Regalona.r1.5AG0006350 ... CQ.Regalona.r1.5BG0006630, CQ.Regalona.r1.6AG0011050, CQ.Regalona.r1.8AG0018460, CQ.Regalona.r1.8BG0023920
Anacardiaceae	Pistacia vera	6	pistato.v30005360, pistato.v30023140, pistato.v30130190 ... pistato.v30130800, pistato.v30134940, pistato.v30263090
Apiaceae	Apium graveolens	5	Ag11G05047, Ag3G00877, Ag4G00759, Ag4G02242, Ag8G00602
Arecaceae	Cocos nucifera	6	COCNU_01G008410, COCNU_02G018700, COCNU_06G003200 ... COCNU_11G009560, COCNU_11G012890, COCNU_14G001820
Arecaceae	Phoenix dactylifera	3	gene-LOC103701526, gene-LOC103707075, gene-LOC103708356
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.54.V1.1, AsparagusV1_05.2441.V1.1 ... AsparagusV1_05.2716.V1.1, AsparagusV1_05.3499.V1.1
Asteraceae	Flaveria trinervia	10	Ftri11G23872, Ftri13G04076, Ftri14G27108, Ftri15G03410 ... Ftri15G08299, Ftri15G32552, Ftri18G05830, Ftri3G26990, Ftri4G01046, Ftri8G09870
Brassicaceae	Arabidopsis thaliana	6	AT3G01590.2, AT3G61610.1, AT4G23730.1, AT4G25900.1 ... AT5G14500.1, AT5G57330.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10006104m.g.v1.0, Thhalv10014164m.g.v1.0 ... Thhalv10014200m.g.v1.0, Thhalv10021199m.g.v1.0, Thhalv10025755m.g.v1.0, Thhalv10025817m.g.v1.0, Thhalv10026020m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp3g00460.v2.2, Sp5g01800.v2.2, Sp6g19050.v2.2 ... Sp6g29510.v2.2, Sp7g21670.v2.2, Sp7g23920.v2.2
Brassicaceae	Brassica nigra	13	BniB02g036680.2N, BniB02g080720.2N, BniB03g012620.2N ... BniB05g001850.2N, BniB05g011480.2N, BniB05g013440.2N, BniB05g036900.2N, BniB06g053080.2N, BniB07g035180.2N, BniB08g006990.2N, BniB08g013860.2N, BniB08g075750.2N, BniB08g075880.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G1223, Ceq02G1896, Ceq03G0219, Ceq03G1110, Ceq05G0650
Casuarinaceae	Casuarina glauca	5	Cgl02G1263, Cgl02G1973, Cgl03G0260, Cgl03G1202, Cgl05G0663
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno02g12790, gene.Cymno04g01270, gene.Cymno06g06760 ... gene.Cymno07g04830, gene.Cymno07g12540, gene.Cymno08g00890
Dunaliellaceae	Dunaliella salina	1	Dusal.0115s00012.v1.0
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate02g25640, gene.Thate03g22510, gene.Thate04g22680 ... gene.Thate05g05800, gene.Thate07g16140, gene.Thate09g00630
Malvaceae	Hibiscus hamabo Siebold & Zucc.	7	nbisL1-mrna-11219, nbisL1-mrna-2269, nbisL1-mrna-2448 ... nbisL1-mrna-2461, nbisL1-mrna-3364, nbisL1-mrna-4654, nbisL1-mrna-846
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.702, evm.TU.LG04.760, evm.TU.LG05.282 ... evm.TU.LG07.64, evm.TU.LG10.1491
Plantaginaceae	Plantago ovata	3	Pov_00017331, Pov_00024178, Pov_00028419
Plumbaginaceae	Limonium bicolor	3	Lb2G11199, Lb2G11201, Lb3G17122
Poaceae	Echinochloa crus-galli	15	AH02.2597, AH05.1339, AH07.549, AH08.802, AH09.2203 ... BH02.2698, BH05.1510, BH07.675, BH08.847, BH09.2374, CH02.3840, CH05.1710, CH07.555, CH08.935, CH09.2522
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0027240, gene-QOZ80_1BG0077440 ... gene-QOZ80_2AG0103460, gene-QOZ80_2BG0156770, gene-QOZ80_4AG0300970, gene-QOZ80_4BG0331710, gene-QOZ80_5AG0362590, gene-QOZ80_5BG0410760, gene-QOZ80_8AG0623500, gene-QOZ80_8BG0651730
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0090330.1, HORVU.MOREX.r3.2HG0193070.1 ... HORVU.MOREX.r3.2HG0202520.1, HORVU.MOREX.r3.6HG0570230.1, HORVU.MOREX.r3.7HG0694820.1
Poaceae	Lolium multiflorum	5	gene-QYE76_020917, gene-QYE76_021009, gene-QYE76_032393 ... gene-QYE76_046126, gene-QYE76_047045
Poaceae	Oryza coarctata	11	Oco01G016250, Oco02G016480, Oco03G003840, Oco04G003770 ... Oco07G015140, Oco07G017960, Oco08G014640, Oco08G017330, Oco09G017130, Oco15G004790, Oco16G004490
Poaceae	Oryza sativa	6	LOC_Os01g46950.1, LOC_Os02g08030.1, LOC_Os04g51390.1 ... LOC_Os04g56290.1, LOC_Os05g49430.1, LOC_Os08g14330.2
Poaceae	Paspalum vaginatum	5	gene-BS78_03G217600, gene-BS78_04G056900 ... gene-BS78_06G266200, gene-BS78_07G093400, gene-BS78_09G241300
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0202364, Pt_Chr0300545, Pt_Chr0300567, Pt_Chr0301411 ... Pt_Chr0402618, Pt_Chr0502948, Pt_Chr0505610
Poaceae	Sporobolus alterniflorus	13	Chr02G013830, Chr03G012190, Chr08G012470, Chr0G027820 ... Chr16G003170, Chr17G002750, Chr18G016610, Chr20G009600, Chr22G000860, Chr25G001600, Chr26G017300, Chr29G009300, Chr30G001600
Poaceae	Thinopyrum elongatum	5	Tel1E01G677700, Tel2E01G738700, Tel2E01G848400 ... Tel6E01G312700, Tel7E01G496900
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG060350, gene_TRIDC1BG069110 ... gene_TRIDC2AG062850, gene_TRIDC2AG070530, gene_TRIDC2BG066560, gene_TRIDC2BG076260, gene_TRIDC6AG021140, gene_TRIDC6BG027030, gene_TRIDC7AG040040, gene_TRIDC7BG030250
Poaceae	Triticum aestivum	15	TraesCS1A02G409900.1, TraesCS1B02G439900.1 ... TraesCS1D02G417300.1, TraesCS2A02G437100.1, TraesCS2A02G501600.1, TraesCS2B02G456200.2, TraesCS2B02G529800.1, TraesCS2D02G432900.1, TraesCS2D02G502100.1, TraesCS6A02G152400.1, TraesCS6B02G180500.1, TraesCS6D02G142200.1, TraesCS7A02G288900.1, TraesCS7B02G185300.2, TraesCS7D02G292700.1
Poaceae	Zea mays	6	Zm00001eb067700_P001, Zm00001eb157870_P002 ... Zm00001eb178250_P001, Zm00001eb206840_P001, Zm00001eb296350_P001, Zm00001eb414550_P001
Poaceae	Zoysia japonica	5	nbis-gene-13617, nbis-gene-23081, nbis-gene-24814 ... nbis-gene-25972, nbis-gene-53679
Poaceae	Zoysia macrostachya	9	Zma_g10795, Zma_g15044, Zma_g20598, Zma_g21920, Zma_g22131 ... Zma_g22682, Zma_g23820, Zma_g27410, Zma_g28830
Portulacaceae	Portulaca oleracea	10	evm.TU.LG02.2725, evm.TU.LG04.2204, evm.TU.LG04.3306 ... evm.TU.LG06.102, evm.TU.LG10.428, evm.TU.LG16.294, evm.TU.LG17.425, evm.TU.LG19.1237, evm.TU.LG23.935, evm.TU.LG24.1253
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g06820, gene.Posoc03g14570, gene.Posoc05g02650 ... gene.Posoc08g14060
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.285, evm.TU.Scaffold_14_RagTag.133 ... evm.TU.Scaffold_16_RagTag.111, evm.TU.Scaffold_3_RagTag.1935, evm.TU.Scaffold_4_RagTag.2032, evm.TU.Scaffold_9_RagTag.574
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-13282, nbisL1-mrna-21692, nbisL1-mrna-22356 ... nbisL1-mrna-2413, nbisL1-mrna-25457, nbisL1-mrna-2562
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-12605, nbisL1-mrna-2883, nbisL1-mrna-3684 ... nbisL1-mrna-4395, nbisL1-mrna-6777, nbisL1-mrna-7821
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-20371, nbisL1-mrna-3099, nbisL1-mrna-7375 ... nbisL1-mrna-8599
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.226, evm.TU.utg000007l.315 ... evm.TU.utg000008l.1180, evm.TU.utg000019l.57, evm.TU.utg000022l.425, evm.TU.utg000033l.190
Rhizophoraceae	Kandelia obovata	6	Maker00000166, Maker00001698, Maker00014237, Maker00014683 ... Maker00017734, Maker00018456
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12027, nbisL1-mrna-14251, nbisL1-mrna-15988 ... nbisL1-mrna-16579, nbisL1-mrna-1723, nbisL1-mrna-3566
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-10961, nbisL1-mrna-14670, nbisL1-mrna-19580 ... nbisL1-mrna-20973, nbisL1-mrna-5466, nbisL1-mrna-6735
Salicaceae	Populus euphratica	9	populus_peu01108, populus_peu03647, populus_peu04154 ... populus_peu05287, populus_peu05290, populus_peu05360, populus_peu05414, populus_peu31596, populus_peu34983
Solanaceae	Lycium barbarum	4	gene-LOC132603372, gene-LOC132621580, gene-LOC132634823 ... gene-LOC132645490
Solanaceae	Solanum chilense	5	SOLCI002687600, SOLCI003540000, SOLCI003906500 ... SOLCI004254000, SOLCI005351200
Solanaceae	Solanum pennellii	5	gene-LOC107007926, gene-LOC107008938, gene-LOC107026328 ... gene-LOC107028741, gene-LOC107032365
Tamaricaceae	Reaumuria soongarica	6	STRG.14720_chr08_+, STRG.23275_chr05_+, STRG.23368_chr05_- ... gene_1385, gene_15202, gene_928
Tamaricaceae	Tamarix chinensis	7	TC01G3563, TC01G4242, TC03G1004, TC03G2157, TC09G2300 ... TC10G0828, TC12G0488
Zosteraceae	Zostera marina	6	Zosma02g11490.v3.1, Zosma02g22810.v3.1, Zosma03g00510.v3.1 ... Zosma03g18980.v3.1, Zosma04g00930.v3.1, Zosma04g06810.v3.1