Basic Information
Locus ID:
nbisL1-mrna-25411
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2709944 | 2716798 | - | nbisL1-mrna-25411 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 120,947.85 Da | 44.92 | 73.59 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 818 | 1075 | 4.25156E-106 | - |
| CDD | cd06410 | PB1_UP2 | 30 | 126 | 1.84828E-46 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 813 | 1075 | 6.1E-62 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 42 | 127 | 2.7E-17 | IPR000270 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 43 | 131 | 7.06E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 804 | 1073 | 4.1E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 898 | 1084 | 8.6E-55 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 45 | 128 | 2.4E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 796 | 897 | 3.1E-24 | - |
| SMART | SM00220 | serkin_6 | 812 | 1079 | 4.2E-56 | IPR000719 |
| SMART | SM00666 | PB1_new | 41 | 126 | 3.1E-31 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 812 | 1078 | 40.569538 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 937 | 949 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 818 | 839 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1046 | 1068 | 2.9E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 931 | 949 | 2.9E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 894 | 907 | 2.9E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1002 | 1024 | 2.9E-16 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57610.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_002526218.2 | uncharacterized protein LOC8277895 isoform X1 [Ricinus communis] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JZT5 | Uncharacterized protein MANES_06G025700 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31480 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9167 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014802 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g198740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25206, Sbi_jg9047 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19540 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007606, GOSA_00007607 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42475, Sgl47204 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010267, gene:ENSEOMG00000032832 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0018030, CQ.Regalona.r1.8BG0024310 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30263800 |
| Apiaceae | Apium graveolens | 1 | Ag10G02761 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720427 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2518.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G20249, Ftri7G10441 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012514m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19300.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g013730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1206 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1310 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g08890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g14820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.427 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017273 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26582, Lb5G26583 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3718, BH07.3540, CH07.3612 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148350, gene-QOZ80_2BG0203720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0622060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018322, gene-QYE76_026136 |
| Poaceae | Oryza coarctata | 2 | Oco03G023710, Oco04G024270 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g54510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G300000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202978 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G018140, Chr0G032570, Chr13G002340, Chr15G002050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G615000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG051980, gene_TRIDC6BG060580 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G344800.1, TraesCS6B02G377500.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192780_P001, Zm00001eb257270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39973 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14581, Zma_g17299 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2692, evm.TU.LG02.2694, evm.TU.LG23.905 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2087 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25411 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8266 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4853 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1216 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000089 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14288 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19430 |
| Salicaceae | Populus euphratica | 4 | populus_peu05480, populus_peu12086, populus_peu12100 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602814 |
| Solanaceae | Solanum chilense | 1 | SOLCI000388000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9168 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0880, TC12G0525 |
| Zosteraceae | Zostera marina | 2 | Zosma01g40090.v3.1, Zosma04g03570.v3.1 |