Basic Information
Locus ID:
nbisL1-mrna-2540
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002177F_pilon | 395377 | 407682 | + | nbisL1-mrna-2540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 108,582.87 Da | 46.15 | 79.27 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 256 | 577 | 2.4985E-84 | - |
| CDD | cd18793 | SF2_C_SNF | 779 | 930 | 3.15493E-52 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 693 | 737 | 1.1E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 821 | 920 | 1.4E-13 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 277 | 656 | 1.2E-65 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 587 | 977 | 6.5E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 682 | 731 | 1.89E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 237 | 577 | 4.25E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 448 | 583 | 4.9E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 231 | 321 | 1.1E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 679 | 744 | 1.6E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 348 | 437 | 8.1E-9 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 594 | 978 | 3.9E-63 | IPR027417 |
| SMART | SM00184 | ring_2 | 694 | 734 | 8.5E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 837 | 920 | 1.6E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 252 | 556 | 2.0E-26 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 271 | 539 | 11.741413 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 810 | 973 | 13.561301 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 694 | 733 | 11.323791 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 709 | 718 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 70 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021675592.1 | helicase-like transcription factor CHR28 [Hevea brasiliensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5QLQ8 | Putative ATP-dependent helicase C23E6.02 isoform X 1 OS=Populus alba OX=43335 GN=D5086_0000071630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology