Basic Information
Locus ID:
nbisL1-mrna-25336
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1996901 | 1998954 | + | nbisL1-mrna-25336 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 51,213.74 Da | 69.45 | 65.60 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 382 | 457 | 3.89E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 383 | 460 | 3.2E-6 | IPR013083 |
| SMART | SM00184 | ring_2 | 400 | 457 | 2.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 400 | 458 | 9.715714 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 277 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024459877.2 | uncharacterized protein LOC7465974 isoform X2 [Populus trichocarpa] | 0 |
| TrEMBL | A0A8X7ZJB5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9212 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014916 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24782, Sbi_jg8648 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19958 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022274 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42562, Sgl47316 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017310, CQ.Regalona.r1.8BG0018280 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2598, evm.TU.LG23.821 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25336 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8764 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1256 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000021 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1938 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9242 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602911 |
| Solanaceae | Solanum chilense | 1 | SOLCI004411300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025734 |