Basic Information
Locus ID:
nbisL1-mrna-2531
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002177F_pilon | 231519 | 238496 | + | nbisL1-mrna-2531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 90,000.47 Da | 48.53 | 81.55 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00183 | Hsp90 protein | 423 | 763 | 5.9E-134 | IPR001404 |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 107 | 233 | 3.7E-7 | IPR003594 |
| Pfam | PF00183 | Hsp90 protein | 237 | 395 | 2.2E-50 | IPR001404 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 309 | 398 | 6.37E-24 | IPR020568 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 423 | 594 | 9.86E-59 | IPR020568 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 616 | 737 | 6.41E-34 | IPR037196 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 110 | 265 | 5.75E-35 | IPR036890 |
| Gene3D | G3DSA:3.30.230.80 | - | 420 | 506 | 4.1E-35 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 182 | 280 | 2.8E-20 | IPR036890 |
| Gene3D | G3DSA:3.30.565.10 | - | 71 | 181 | 3.0E-30 | IPR036890 |
| Gene3D | G3DSA:3.40.50.11260 | - | 507 | 593 | 7.7E-31 | - |
| Gene3D | G3DSA:3.30.230.80 | - | 307 | 411 | 4.2E-31 | - |
| Gene3D | G3DSA:1.20.120.790 | - | 594 | 741 | 1.3E-52 | IPR037196 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 421 | 780 | 6.8E-106 | IPR001404 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 61 | 183 | 7.4E-28 | IPR001404 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 176 | 401 | 9.1E-51 | IPR001404 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 166 | 183 | 3.0E-18 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 148 | 165 | 3.0E-18 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 99 | 121 | 3.0E-18 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 82 | 738 | 21.265526 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 789 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04030.1 | Chaperone protein htpG family protein. Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. | 0 |
| RefSeq | XP_021591904.1 | heat shock protein 90-5, chloroplastic [Manihot esculenta] | 0 |
| Q9SIF2 | Heat shock protein 90-5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HSP90-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KRL8 | Uncharacterized protein MANES_14G091600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology