Basic Information
Locus ID:
nbisL1-mrna-25277
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1394192 | 1395395 | - | nbisL1-mrna-25277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 40,272.53 Da | 31.61 | 72.84 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 26 | 362 | 1.99588E-141 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 32 | 356 | 3.1E-83 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 33 | 358 | 9.13E-69 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 262 | 327 | 5.37E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 42 | 358 | 3.2E-114 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 261 | 327 | 3.2E-114 | IPR029070 |
| SMART | SM00636 | 2g34 | 28 | 356 | 3.3E-105 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 28 | 370 | 73.2817 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | H6WS86 | Chitinase 2 OS=Populus canadensis OX=3690 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology