Basic Information
Locus ID:
nbisL1-mrna-25267
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1308693 | 1310397 | - | nbisL1-mrna-25267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 42,759.16 Da | 34.47 | 82.49 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 32 | 370 | 4.64648E-152 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 37 | 364 | 8.5E-77 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 270 | 335 | 1.83E-12 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 36 | 364 | 4.55E-72 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 269 | 335 | 1.0E-104 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 52 | 364 | 1.0E-104 | - |
| SMART | SM00636 | 2g34 | 34 | 364 | 2.3E-96 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 34 | 380 | 70.3564 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 140 | 148 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_021634450.2 | class V chitinase CHIT5b [Manihot esculenta] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JMW1 | Uncharacterized protein MANES_14G141000 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology