Basic Information
Locus ID:
nbisL1-mrna-25219
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PHD finger protein MALE MEIOCYTE DEATH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002334F_pilon | 9937 | 11403 | + | nbisL1-mrna-25219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 54,950.14 Da | 46.54 | 85.70 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 422 | 466 | 3.43608E-24 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 411 | 471 | 2.88E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 406 | 472 | 1.4E-13 | IPR013083 |
| SMART | SM00249 | PHD_3 | 421 | 467 | 4.7E-5 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 422 | 466 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66170.1 | RING/FYVE/PHD zinc finger superfamily protein. encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. | 0 |
| RefSeq | YP_010131405.1 | hypothetical protein KQ580_mgp36 (mitochondrion) [Bruguiera sexangula] | 0 |
| Q7X6Y7 | PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana OX=3702 GN=MMD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7T3QPM6 | PHD domain-containing protein OS=Bruguiera sexangula OX=98584 GN=ORF492 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology