Basic Information
Locus ID:
nbisL1-mrna-252
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2100410 | 2104135 | - | nbisL1-mrna-252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 112,983.42 Da | 40.84 | 97.38 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 690 | 967 | 6.33302E-93 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 62 | 1.5E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 234 | 253 | 0.39 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 565 | 587 | 1.4 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 517 | 555 | 4.6E-7 | IPR025875 |
| Pfam | PF00069 | Protein kinase domain | 686 | 965 | 7.3E-48 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 383 | 587 | 8.84E-42 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 368 | 1.97E-59 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 673 | 966 | 5.4E-74 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 174 | 6.3E-42 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 667 | 763 | 5.1E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 279 | 377 | 9.3E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 175 | 278 | 3.5E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 378 | 619 | 2.0E-59 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 764 | 989 | 2.6E-60 | - |
| SMART | SM00369 | LRR_typ_2 | 492 | 516 | 71.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 684 | 967 | 6.2E-26 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 540 | 564 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 517 | 539 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 183 | 208 | 89.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 232 | 256 | 0.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 135 | 159 | 210.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 684 | 968 | 36.612019 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 819 | 831 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 690 | 714 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 540 | 553 | 3.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 519 | 532 | 3.0E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_039052169.1 | receptor-like protein kinase HSL1 [Hibiscus syriacus] | 0 |
| C0LGX3 | LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana OX=3702 GN=HSL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2WFZ4 | Detected protein of confused Function OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116997pilonHSYRG00017 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology