Basic Information
Locus ID:
nbisL1-mrna-25189
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 509639 | 516264 | + | nbisL1-mrna-25189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 48,027.01 Da | 27.27 | 102.35 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 124 | 226 | 2.67375E-26 | - |
| CDD | cd00030 | C2 | 303 | 396 | 4.93164E-27 | - |
| Pfam | PF00168 | C2 domain | 301 | 400 | 8.5E-25 | IPR000008 |
| Pfam | PF00168 | C2 domain | 122 | 226 | 1.9E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 298 | 420 | 8.83E-34 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 120 | 252 | 7.12E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 287 | 419 | 3.1E-35 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 115 | 250 | 5.5E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 302 | 400 | 1.5E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 123 | 223 | 6.6E-25 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 103 | 224 | 21.166565 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 1 | 109 | 15.939965 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 284 | 401 | 21.216278 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 318 | 330 | 6.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 366 | 374 | 6.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 344 | 357 | 6.1E-6 | IPR000008 |
| Coils | Coil | Coil | 423 | 426 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.2 | - | 0 |
| RefSeq | XP_021682018.1 | - | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K0D7 | Synaptotagmin-5 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology