Basic Information
Locus ID:
nbisL1-mrna-25182
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 465974 | 467447 | - | nbisL1-mrna-25182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 39,434.29 Da | 44.87 | 79.97 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 308 | 334 | 4.7E-6 | IPR027370 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 259 | 301 | 2.35E-7 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 336 | 7.06E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 337 | 3.2E-7 | IPR013083 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 242 | 307 | 14.770677 | IPR017921 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_024461997.1 | - | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AS50 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2274 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25182 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.504 |