Basic Information
Locus ID:
nbisL1-mrna-25148
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 165227 | 175099 | - | nbisL1-mrna-25148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 127,501.27 Da | 43.00 | 81.26 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 921 | 954 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 349 | 668 | 1.68E-39 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 839 | 1100 | 1.19E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 318 | 549 | 3.3E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 835 | 1109 | 1.2E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 550 | 695 | 3.4E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 6.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 832 | 869 | 65.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 669 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1006 | 1047 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 915 | 954 | 6.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.0054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 582 | 75.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 872 | 912 | 3.1 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.9E-15 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.807096 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 458 | 492 | 8.597424 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 922 | 963 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 922 | 956 | 10.363778 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1114 | 1129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1129 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.2 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_027333456.1 | topless-related protein 4-like isoform X2 [Abrus precatorius] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0HJQ5 | Topless-related protein 4-like OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR04172 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology