Basic Information
Locus ID:
nbisL1-mrna-25134
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 58393 | 60348 | + | nbisL1-mrna-25134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 69,169.85 Da | 42.45 | 105.15 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 222 | 245 | 1.5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 542 | 563 | 1.1 | IPR001611 |
| Pfam | PF00646 | F-box domain | 62 | 103 | 6.9E-6 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 247 | 270 | 0.009 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 100 | 1.26E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 179 | 357 | 1.33E-23 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 305 | 649 | 3.14E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 261 | 449 | 2.2E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 450 | 651 | 6.6E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 151 | 260 | 7.9E-22 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 486 | 511 | 0.039 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 406 | 431 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 592 | 617 | 30.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 380 | 405 | 3.6 | IPR006553 |
| SMART | SM00256 | fbox_2 | 66 | 107 | 3.3E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 618 | 643 | 380.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 196 | 221 | 0.13 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 222 | 247 | 3.8E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 248 | 273 | 3.3E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 460 | 485 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 540 | 565 | 0.0086 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 354 | 379 | 0.52 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 566 | 590 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 513 | 538 | 25.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 274 | 299 | 7.1E-4 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_011017769.1 | PREDICTED: EIN3-binding F-box protein 1-like [Populus euphratica] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JKB4 | EIN3-binding F-box protein 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology