Basic Information
Locus ID:
nbisL1-mrna-25123
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
omega-3 fatty acid desaturase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 29744879 | 29745496 | + | nbisL1-mrna-25123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 18,868.25 Da | 37.12 | 83.99 | -0.03 |
Protein Domain:
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05580.2 | fatty acid desaturase 8. Encodes a temperature sensitive plastidic fatty acid desaturase. | 0 |
| RefSeq | XP_007026674.2 | - | 0 |
| P48621 | Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max OX=3847 GN=FAD7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JJS1 | Omega-3 desaturase family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3253 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21601 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30022530, pistato.v30248550, pistato.v30266150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0243780.1 |
| Poaceae | Oryza coarctata | 1 | Oco03G020330 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G012270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G373000 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-19558, nbis-gene-3627, nbis-gene-57387 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.937 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-25123, nbisL1-mrna-30082 |