Basic Information
Locus ID:
nbisL1-mrna-25038
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 28755030 | 28758946 | - | nbisL1-mrna-25038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 121,319.61 Da | 32.83 | 105.63 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 171 | 230 | 1.3E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 70 | 4.1E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 267 | 289 | 0.048 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 828 | 1097 | 2.6E-43 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 98 | 158 | 1.0E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 810 | 1099 | 4.59E-70 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 409 | 731 | 2.82E-58 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 78 | 429 | 4.16E-73 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 796 | 899 | 7.4E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 454 | 4.8E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 143 | 1.9E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 217 | 289 | 7.3E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 654 | 746 | 1.6E-17 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 900 | 1106 | 3.3E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 455 | 653 | 1.1E-60 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 144 | 216 | 8.7E-19 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 217 | 241 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 313 | 337 | 17.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 97 | 129 | 80.0 | - |
| SMART | SM00369 | LRR_typ_2 | 361 | 385 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 434 | 457 | 410.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 823 | 1105 | 3.8E-24 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 193 | 216 | 66.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 193 | 219 | 44.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 313 | 328 | 390.0 | - |
| SMART | SM00369 | LRR_typ_2 | 97 | 121 | 1.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 265 | 289 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 673 | 696 | 310.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 552 | 578 | 200.0 | - |
| SMART | SM00369 | LRR_typ_2 | 552 | 576 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 624 | 648 | 90.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 458 | 481 | 230.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 823 | 1104 | 36.089062 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 945 | 957 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 829 | 852 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 552 | 565 | 9.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 100 | 113 | 9.4E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 0 |
| RefSeq | XP_011033023.1 | PREDICTED: receptor-like protein kinase isoform X1 [Populus euphratica] | 0 |
| P93194 | Receptor-like protein kinase OS=Ipomoea nil OX=35883 GN=INRPK1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T2YA79 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_016623 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17953 |
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_10131, gene_10132, gene_11069, gene_9572, gene_9573 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016036 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g074780, BVRB_8g188990 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17418, Sbi_jg25750, Sbi_jg62067, Sbi_jg9575 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19063, Seu_jg679 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007558 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl02629, Sgl24258, Sgl29433, Sgl43984, Sgl48751, Sgl83000 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000009920, gene:ENSEOMG00000010637 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0010590, CQ.Regalona.r1.8AG0010610 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30131000, pistato.v30131010, pistato.v30131030 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720432 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G10341, Ftri1G13974 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17750.1, AT1G73080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018036m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15830.v2.2, Sp5g28040.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB03g039220.2N, BniB03g053930.2N, BniB03g053940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2818 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2971 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g08830, gene.Cymno06g07090 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10900 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.648, evm.TU.LG01.649 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001071 |
| Poaceae | Echinochloa crus-galli | 2 | AH08.1717, CH08.1918 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0661540 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0659090.1, HORVU.MOREX.r3.7HG0669620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031323, gene-QYE76_031332 |
| Poaceae | Oryza coarctata | 1 | Oco15G013590 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g34640.1, LOC_Os08g34650.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G152300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G014860, Chr17G014300, Chr17G014310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G302000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG018230, gene_TRIDC7AG025710 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G148600.4, TraesCS7A02G203700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb040920_P001, Zm00001eb177060_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50498, nbis-gene-58446 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23073, Zma_g24144 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3077, evm.TU.LG16.456, evm.TU.LG18.1612 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g19520, gene.Posoc03g14010 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60361.5, evm.TU.60362.5 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25038 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9372 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21180 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.909 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11090 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21759 |
| Salicaceae | Populus euphratica | 2 | populus_peu05982, populus_peu05991 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633579 |
| Solanaceae | Solanum chilense | 1 | SOLCI004688600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012529 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15016_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0989 |