Basic Information
Locus ID:
nbisL1-mrna-24892
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 27331739 | 27335335 | - | nbisL1-mrna-24892 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 29,700.90 Da | 44.77 | 90.95 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 187 | 245 | 8.4E-27 | IPR039512 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 148 | 182 | 4.9E-6 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 186 | 3.53E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 193 | 1.2E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 211 | 252 | 3.9E-20 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_048233926.1 | E3 ubiquitin-protein ligase RZFP34 [Ricinus communis] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MPJ2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology