Basic Information
Locus ID:
nbisL1-mrna-24872
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
exonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 37335 | 43915 | - | nbisL1-mrna-24872 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 70,467.87 Da | 48.64 | 83.00 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09901 | H3TH_FEN1-like | 266 | 333 | 6.93314E-26 | - |
| CDD | cd09857 | PIN_EXO1 | 35 | 204 | 3.10624E-82 | IPR044752 |
| Pfam | PF00752 | XPG N-terminal domain | 33 | 109 | 1.9E-9 | IPR006085 |
| Pfam | PF00867 | XPG I-region | 138 | 206 | 1.6E-14 | IPR006086 |
| SUPERFAMILY | SSF47807 | 5' to 3' exonuclease, C-terminal subdomain | 264 | 362 | 1.38E-19 | IPR036279 |
| SUPERFAMILY | SSF88723 | PIN domain-like | 34 | 203 | 3.68E-36 | IPR029060 |
| Gene3D | G3DSA:3.40.50.1010 | - | 17 | 209 | 3.2E-44 | - |
| Gene3D | G3DSA:1.10.150.20 | - | 263 | 329 | 6.5E-18 | - |
| SMART | SM00484 | xpgineu | 137 | 222 | 5.6E-12 | IPR006086 |
| SMART | SM00485 | xpgn3 | 26 | 111 | 0.0022 | IPR006085 |
| ProSitePatterns | PS00842 | XPG protein signature 2. | 140 | 154 | - | IPR019974 |
| PRINTS | PR00853 | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 136 | 153 | 3.3E-8 | IPR006084 |
| PRINTS | PR00853 | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 32 | 46 | 3.3E-8 | IPR006084 |
| PRINTS | PR00853 | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 85 | 104 | 3.3E-8 | IPR006084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 627 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18090.1 | 5'-3' exonuclease family protein. | 0 |
| RefSeq | XP_020533793.1 | exonuclease 1 isoform X1 [Jatropha curcas] | 0 |
| Q8L6Z7 | Exonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=EXO1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067L1M9 | Exonuclease 1 OS=Jatropha curcas OX=180498 GN=JCGZ_03614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20690 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20050, gene_505 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002274, Ah016724 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g111960 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg32200, Sbi_jg40297, Sbi_jg40298, Sbi_jg50288 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1878, Seu_jg1879, Seu_jg24935 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011460, GOSA_00011461, GOSA_00022191 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41672, Sgl53980, Sgl59308, Sgl59309 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011281, gene:ENSEOMG00000020426 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0014790, CQ.Regalona.r1.5BG0015830 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30071070, pistato.v30150210, pistato.v30287190 |
| Apiaceae | Apium graveolens | 12 | Ag10G01426, Ag11G04921, Ag3G01237, Ag3G02197, Ag4G00416 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G009330, COCNU_06G013420 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103710190, gene-LOC103722980, gene-LOC108510706 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.2925.V1.1, AsparagusV1_03.1965.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G08729 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G18090.1, AT1G29630.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006968m.g.v1.0, Thhalv10007197m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g16110.v2.2, Sp1g25530.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g007450.2N, BniB03g033970.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2861, Ceq04G0457 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G3009, Cgl04G0557 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g05360, gene.Cymno11g02120 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0215s00010.v1.0, Dusal.0832s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g12260, gene.Thate09g05980 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4722 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.732, evm.TU.LG12.733 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004823, Pov_00018645 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G16525, Lb3G19778, Lb3G19807, Lb5G27171 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3468, AH05.539, BH02.3484, BH05.590, CH02.3030 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0035490, gene-QOZ80_1BG0085630 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0293210.1, HORVU.MOREX.r3.7HG0712230.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018823, gene-QYE76_027205, gene-QYE76_027206 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G021760, Oco02G022350 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g56940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G295000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601613, Pt_Chr0702355 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G008110, Chr03G017490, Chr05G025410, Chr08G017420 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G509200, Tel7E01G589600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG045920, gene_TRIDC3BG052050 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G319700.1, TraesCS3B02G346600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb151620_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12382, nbis-gene-31240, nbis-gene-54145 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25682 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2248, evm.TU.LG04.1599, evm.TU.LG10.1310 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g03600, gene.Posoc04g11620 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.435, evm.TU.Scaffold_4_RagTag.714 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28643, nbisL1-mrna-30688 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1766, nbisL1-mrna-3232 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1652, nbisL1-mrna-22066 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000015l.87, evm.TU.utg000008l.463 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000162, Maker00015623 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-14441, nbisL1-mrna-4129, nbisL1-mrna-4130 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-19210, nbisL1-mrna-19211, nbisL1-mrna-22193 ... |
| Salicaceae | Populus euphratica | 2 | populus_peu17956, populus_peu28283 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623942, gene-LOC132633238 |
| Solanaceae | Solanum chilense | 2 | SOLCI000442800, SOLCI004832200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009082, gene-LOC107012887 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.28176_chr04_+, gene_12651, gene_5806 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2829, TC05G1039 |
| Zosteraceae | Zostera marina | 2 | Zosma03g01610.v3.1, Zosma06g09840.v3.1 |