Basic Information
Locus ID:
nbisL1-mrna-24848
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 26896028 | 26901333 | - | nbisL1-mrna-24848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 34,642.63 Da | 36.92 | 77.56 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 254 | 302 | 7.6E-10 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 248 | 308 | 4.2E-16 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 17 | 191 | 1.1E-14 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 232 | 315 | 1.1E-16 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 14 | 203 | 7.1E-6 | IPR027267 |
| SMART | SM00326 | SH3_2 | 250 | 305 | 2.5E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 247 | 306 | 20.472355 | IPR001452 |
| Coils | Coil | Coil | 147 | 167 | - | - |
| Coils | Coil | Coil | 106 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_021662387.1 | SH3 domain-containing protein 1-like [Hevea brasiliensis] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6M5N6 | SH3 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_025861 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology