halophFGD

Basic Information

Locus ID: nbisL1-mrna-24815

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: Leucine rich repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
002165F_pilon	1939	2743	+	nbisL1-mrna-24815

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.67	24,150.06 Da	31.95	92.52	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00560	Leucine Rich Repeat	3	24	0.012	IPR001611
Pfam	PF13855	Leucine rich repeat	82	141	3.7E-10	IPR001611
SUPERFAMILY	SSF52058	L domain-like	2	170	1.53E-26	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	1	182	1.3E-49	IPR032675
SMART	SM00369	LRR_typ_2	80	103	110.0	IPR003591
SMART	SM00369	LRR_typ_2	104	127	6.2	IPR003591
SMART	SM00369	LRR_typ_2	1	24	20.0	IPR003591
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	106	128	7.311519	IPR001611
PRINTS	PR00019	Leucine-rich repeat signature	4	17	4.9E-7	-
PRINTS	PR00019	Leucine-rich repeat signature	104	117	4.9E-7	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017613466.1	-	0
TrEMBL	A0A6P4MEU5	-	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg33036, jg33037
Amaranthaceae	Atriplex hortensis	38	Ah010464, Ah010465, Ah010466, Ah010467, Ah010469, Ah010470 ... Ah010471, Ah010472, Ah010474, Ah010475, Ah010476, Ah010477, Ah010479, Ah010480, Ah010482, Ah010483, Ah010484, Ah010486, Ah010488, Ah010489, Ah010490, Ah010491, Ah010492, Ah010493, Ah010496, Ah010498, Ah010499, Ah010500, Ah010501, Ah010503, Ah010504, Ah010505, Ah010506, Ah010537, Ah014223, Ah014224, Ah014225, Ah014855
Amaranthaceae	Beta vulgaris	3	BVRB_9g219410, BVRB_9g219420, BVRB_9g219430
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg11609, Sbi_jg46542, Sbi_jg46543, Sbi_jg46544 ... Sbi_jg54884
Amaranthaceae	Salicornia europaea	5	Seu_jg10251, Seu_jg10254, Seu_jg14879, Seu_jg20859 ... Seu_jg20860
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005140, GOSA_00019555
Amaranthaceae	Suaeda glauca	7	Sgl54407, Sgl56363, Sgl56364, Sgl59738, Sgl61894, Sgl61895 ... Sgl61896
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000010216, gene:ENSEOMG00000010990 ... gene:ENSEOMG00000011814, gene:ENSEOMG00000016153, gene:ENSEOMG00000017071, gene:ENSEOMG00000019041, gene:ENSEOMG00000032193, gene:ENSEOMG00000035209, gene:ENSEOMG00000036712, gene:ENSEOMG00000038116, gene:ENSEOMG00000040911, gene:ENSEOMG00000046462, gene:ENSEOMG00000052007, gene:ENSEOMG00000052692
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.7BG0009560, CQ.Regalona.r1.8AG0023050 ... CQ.Regalona.r1.8AG0023060, CQ.Regalona.r1.8BG0019310, CQ.Regalona.r1.9AG0015030, CQ.Regalona.r1.9AG0015040
Anacardiaceae	Pistacia vera	32	pistato.v30021660, pistato.v30026240, pistato.v30026250 ... pistato.v30049680, pistato.v30118560, pistato.v30119240, pistato.v30119310, pistato.v30119320, pistato.v30119340, pistato.v30119370, pistato.v30128620, pistato.v30128780, pistato.v30128790, pistato.v30128840, pistato.v30129310, pistato.v30129350, pistato.v30132510, pistato.v30181530, pistato.v30223660, pistato.v30223670, pistato.v30223720, pistato.v30261590, pistato.v30261600, pistato.v30261890, pistato.v30262250, pistato.v30264950, pistato.v30265920, pistato.v30266030, pistato.v30266040, pistato.v30266230, pistato.v30266290, pistato.v30266670
Arecaceae	Cocos nucifera	6	COCNU_01G018020, COCNU_01G018030, COCNU_01G018050 ... COCNU_01G018060, COCNU_01G018070, COCNU_03G004220
Arecaceae	Phoenix dactylifera	4	gene-LOC103698575, gene-LOC103699328, gene-LOC103715910 ... gene-LOC120105136
Asteraceae	Flaveria trinervia	3	Ftri9G02933, Ftri9G15985, Ftri9G23920
Brassicaceae	Arabidopsis thaliana	9	AT1G07390.3, AT1G54470.2, AT1G58190.2, AT1G74170.1 ... AT1G74180.1, AT1G74190.1, AT2G25470.1, AT3G53240.1, AT5G49290.1
Brassicaceae	Eutrema salsugineum	13	Thhalv10000451m.g.v1.0, Thhalv10000563m.g.v1.0 ... Thhalv10000565m.g.v1.0, Thhalv10010101m.g.v1.0, Thhalv10018074m.g.v1.0, Thhalv10018082m.g.v1.0, Thhalv10018087m.g.v1.0, Thhalv10018093m.g.v1.0, Thhalv10018158m.g.v1.0, Thhalv10018202m.g.v1.0, Thhalv10019030m.g.v1.0, Thhalv10023329m.g.v1.0, Thhalv10023377m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g06140.v2.2, Sp1g29920.v2.2, Sp5g29380.v2.2
Brassicaceae	Brassica nigra	39	BniB01g017930.2N, BniB01g018360.2N, BniB02g003350.2N ... BniB02g003360.2N, BniB02g003370.2N, BniB02g003400.2N, BniB02g003410.2N, BniB02g003420.2N, BniB02g003440.2N, BniB02g003450.2N, BniB02g003490.2N, BniB02g003500.2N, BniB03g042600.2N, BniB03g052610.2N, BniB03g052620.2N, BniB03g052630.2N, BniB03g052670.2N, BniB03g052690.2N, BniB03g052700.2N, BniB04g033190.2N, BniB04g033200.2N, BniB04g033210.2N, BniB05g071090.2N, BniB05g071100.2N, BniB05g071110.2N, BniB05g071120.2N, BniB05g071150.2N, BniB05g071160.2N, BniB05g071170.2N, BniB06g047760.2N, BniB06g047810.2N, BniB06g047830.2N, BniB06g049040.2N, BniB06g049050.2N, BniB06g058000.2N, BniB06g068500.2N, BniB07g045400.2N, BniB08g027060.2N, BniB08g032820.2N
Casuarinaceae	Casuarina equisetifolia	40	Ceq01G0424, Ceq01G0425, Ceq01G0503, Ceq01G0670, Ceq01G0671 ... Ceq01G0673, Ceq01G0675, Ceq01G0677, Ceq01G0678, Ceq01G0683, Ceq01G0684, Ceq02G2824, Ceq02G2825, Ceq02G2826, Ceq02G2827, Ceq02G2828, Ceq02G2830, Ceq02G2831, Ceq02G2833, Ceq02G2836, Ceq02G2837, Ceq04G0182, Ceq04G0183, Ceq04G0185, Ceq04G0186, Ceq04G0187, Ceq04G0188, Ceq04G0191, Ceq04G0192, Ceq04G0198, Ceq04G0199, Ceq05G2020, Ceq08G0690, Ceq08G0691, Ceq08G0693, Ceq08G0694, Ceq08G0695, Ceq08G0697, Ceq08G0698, CeqSG0384
Casuarinaceae	Casuarina glauca	83	Cgl01G0424, Cgl01G0425, Cgl01G0428, Cgl01G0429, Cgl01G0583 ... Cgl01G0586, Cgl01G0587, Cgl01G0588, Cgl01G0603, Cgl01G0778, Cgl01G0779, Cgl01G0781, Cgl01G0782, Cgl01G0784, Cgl01G0785, Cgl01G0789, Cgl01G0790, Cgl01G0795, Cgl01G0840, Cgl01G0842, Cgl01G0844, Cgl01G0846, Cgl01G0847, Cgl01G0849, Cgl01G0850, Cgl01G0854, Cgl01G0855, Cgl01G0857, Cgl01G0859, Cgl01G0860, Cgl02G2922, Cgl02G2923, Cgl02G2924, Cgl02G2925, Cgl02G2939, Cgl02G2940, Cgl02G2942, Cgl02G2943, Cgl02G2944, Cgl02G2945, Cgl02G2946, Cgl02G2947, Cgl02G2948, Cgl02G2949, Cgl02G2950, Cgl02G2952, Cgl02G2953, Cgl03G1186, Cgl03G1783, Cgl04G0264, Cgl04G0265, Cgl04G0266, Cgl04G0267, Cgl04G0268, Cgl04G0269, Cgl04G0270, Cgl04G0272, Cgl04G0280, Cgl04G0283, Cgl04G0284, Cgl04G0286, Cgl04G0287, Cgl04G0288, Cgl04G0289, Cgl05G1994, Cgl07G1501, Cgl07G1503, Cgl07G1504, Cgl08G0676, Cgl08G0677, Cgl08G0679, Cgl08G0680, Cgl08G0681, Cgl08G0682, Cgl08G0685, Cgl08G0686, Cgl08G0687, Cgl08G1640, Cgl08G1645, Cgl08G1646, Cgl08G1647, Cgl08G1649, Cgl08G1650
Dunaliellaceae	Dunaliella salina	1	Dusal.0638s00002.v1.0
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-4931, nbisL1-mrna-4932, nbisL1-mrna-4946
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG05.1133, evm.TU.LG05.1140, evm.TU.LG05.1144 ... evm.TU.LG05.1147, evm.TU.LG05.877
Plantaginaceae	Plantago ovata	2	Pov_00026414, Pov_00026415
Poaceae	Echinochloa crus-galli	10	AH05.3925, AH05.3926, AH06.1046, AH09.2501, BH05.4006 ... BH06.1089, BH09.2724, BH09.842, CH06.1186, CH09.2921
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_4AG0301690, gene-QOZ80_4AG0301700 ... gene-QOZ80_4BG0332420
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0106290.1, HORVU.MOREX.r3.2HG0204970.1 ... HORVU.MOREX.r3.2HG0204980.1, HORVU.MOREX.r3.2HG0205100.1, HORVU.MOREX.r3.2HG0205110.1.CDS1, HORVU.MOREX.r3.2HG0205120.1
Poaceae	Lolium multiflorum	5	gene-QYE76_038408, gene-QYE76_038410, gene-QYE76_038413 ... gene-QYE76_046256, gene-QYE76_046738
Poaceae	Oryza coarctata	8	Oco07G017480, Oco08G000640, Oco08G002430, Oco08G016880 ... Oco11G003640, Oco11G003650, Oco12G003640, Oco19G001500
Poaceae	Oryza sativa	5	LOC_Os04g02920.1, LOC_Os04g03180.1, LOC_Os04g55420.1 ... LOC_Os04g55440.1, LOC_Os06g08154.1
Poaceae	Paspalum vaginatum	6	gene-BS78_06G250700, gene-BS78_06G250800 ... gene-BS78_06G258300, gene-BS78_06G258400, gene-BS78_09G238500, gene-BS78_10G069100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0305608, Pt_Chr0306622
Poaceae	Sporobolus alterniflorus	6	Chr02G031770, Chr04G015140, Chr05G009590, Chr05G009600 ... Chr06G015860, Chr27G008210
Poaceae	Thinopyrum elongatum	4	Tel2E01G134500, Tel2E01G874200, Tel7E01G292700 ... Tel7E01G293000
Poaceae	Triticum dicoccoides	13	gene_TRIDC2AG006230, gene_TRIDC2AG006370 ... gene_TRIDC2AG006380, gene_TRIDC2AG069080, gene_TRIDC2AG072380, gene_TRIDC2BG006930, gene_TRIDC2BG007180, gene_TRIDC2BG078420, gene_TRIDC2BG078450, gene_TRIDC2BG078460, gene_TRIDC7AG017440, gene_TRIDC7BG006600, gene_TRIDC7BG006670
Poaceae	Triticum aestivum	29	TraesCS2A02G057500.1.cds1, TraesCS2A02G058300.1 ... TraesCS2A02G515100.1, TraesCS2A02G515400.1, TraesCS2A02G515500.1, TraesCS2A02G515600.1, TraesCS2B02G071100.1, TraesCS2B02G071500.1, TraesCS2B02G072300.1, TraesCS2B02G073400.1, TraesCS2B02G088300.1, TraesCS2B02G543400.1, TraesCS2B02G543500.1, TraesCS2B02G543600.1, TraesCS2B02G543900.1, TraesCS2B02G544000.1.cds1, TraesCS2B02G544100.1, TraesCS2D02G056600.1, TraesCS2D02G057300.1, TraesCS2D02G072500.1, TraesCS2D02G516700.1.cds1, TraesCS2D02G516900.2, TraesCS2D02G517100.1, TraesCS7A02G143600.2, TraesCS7A02G143700.1, TraesCS7B02G045500.1, TraesCS7D02G144800.3, TraesCS7D02G145100.1, TraesCS7D02G145200.1.cds1
Poaceae	Zea mays	2	Zm00001eb112120_P001, Zm00001eb310150_P001
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2826, evm.TU.LG02.2828, evm.TU.LG06.1436 ... evm.TU.LG06.1438
Rhizophoraceae	Bruguiera sexangula	47	evm.TU.40322.1, evm.TU.40439.1, evm.TU.40931.1 ... evm.TU.41038.2, evm.TU.42129.1, evm.TU.42738.1, evm.TU.44331.1, evm.TU.44715.1, evm.TU.45055.1, evm.TU.45275.1, evm.TU.45275.2, evm.TU.45565.2, evm.TU.45598.5, evm.TU.45637.1, evm.TU.46143.2, evm.TU.46177.1, evm.TU.46253.5, evm.TU.48779.1, evm.TU.48779.6, evm.TU.48780.1, evm.TU.48780.6, evm.TU.51364.1, evm.TU.51365.1, evm.TU.51370.1, evm.TU.Scaffold_12_RagTag.641, evm.TU.Scaffold_12_RagTag.891, evm.TU.Scaffold_1383_RagTag.1, evm.TU.Scaffold_1524_RagTag.2, evm.TU.Scaffold_1598_RagTag.2, evm.TU.Scaffold_16_RagTag.578, evm.TU.Scaffold_16_RagTag.583, evm.TU.Scaffold_18_RagTag.336, evm.TU.Scaffold_18_RagTag.349, evm.TU.Scaffold_18_RagTag.363, evm.TU.Scaffold_18_RagTag.521, evm.TU.Scaffold_18_RagTag.522, evm.TU.Scaffold_1_RagTag.1847, evm.TU.Scaffold_3_RagTag.120, evm.TU.Scaffold_3_RagTag.122, evm.TU.Scaffold_3_RagTag.130, evm.TU.Scaffold_441_RagTag.2, evm.TU.Scaffold_4_RagTag.2250, evm.TU.Scaffold_4_RagTag.2252, evm.TU.Scaffold_664_RagTag.8, evm.TU.Scaffold_664_RagTag.9, evm.TU.Scaffold_6_RagTag.514, evm.TU.Scaffold_935_RagTag.2
Rhizophoraceae	Carallia pectinifolia	27	nbisL1-mrna-17179, nbisL1-mrna-25209, nbisL1-mrna-25213 ... nbisL1-mrna-25236, nbisL1-mrna-27894, nbisL1-mrna-27895, nbisL1-mrna-27896, nbisL1-mrna-27997, nbisL1-mrna-27998, nbisL1-mrna-28139, nbisL1-mrna-28143, nbisL1-mrna-28146, nbisL1-mrna-28162, nbisL1-mrna-28280, nbisL1-mrna-28283, nbisL1-mrna-28284, nbisL1-mrna-28286, nbisL1-mrna-28287, nbisL1-mrna-28318, nbisL1-mrna-28321, nbisL1-mrna-28322, nbisL1-mrna-28324, nbisL1-mrna-28325, nbisL1-mrna-2953, nbisL1-mrna-3912, nbisL1-mrna-3970, nbisL1-mrna-8501
Rhizophoraceae	Ceriops tagal	14	nbisL1-mrna-10113, nbisL1-mrna-11872, nbisL1-mrna-1498 ... nbisL1-mrna-16320, nbisL1-mrna-16321, nbisL1-mrna-2175, nbisL1-mrna-3814, nbisL1-mrna-4090, nbisL1-mrna-5508, nbisL1-mrna-5992, nbisL1-mrna-7880, nbisL1-mrna-8119, nbisL1-mrna-9415, nbisL1-mrna-9718
Rhizophoraceae	Ceriops zippeliana	30	nbisL1-mrna-14027, nbisL1-mrna-14029, nbisL1-mrna-15465 ... nbisL1-mrna-19966, nbisL1-mrna-19967, nbisL1-mrna-19979, nbisL1-mrna-19980, nbisL1-mrna-19981, nbisL1-mrna-19998, nbisL1-mrna-21045, nbisL1-mrna-21046, nbisL1-mrna-21048, nbisL1-mrna-21049, nbisL1-mrna-22547, nbisL1-mrna-22548, nbisL1-mrna-7700, nbisL1-mrna-7707, nbisL1-mrna-7709, nbisL1-mrna-7710, nbisL1-mrna-7712, nbisL1-mrna-7760, nbisL1-mrna-7764, nbisL1-mrna-7803, nbisL1-mrna-7816, nbisL1-mrna-7817, nbisL1-mrna-7818, nbisL1-mrna-7819, nbisL1-mrna-7829, nbisL1-mrna-7940, nbisL1-mrna-7941
Rhizophoraceae	Kandelia candel	8	add.evm.TU.utg000023l.127, evm.TU.utg000007l.135 ... evm.TU.utg000008l.1314, evm.TU.utg000023l.144, evm.TU.utg000023l.145, evm.TU.utg000023l.247, evm.TU.utg000023l.254, evm.TU.utg000023l.255
Rhizophoraceae	Kandelia obovata	7	Maker00001353, Maker00006112, Maker00018555, Maker00018737 ... Maker00018856, Maker00018966, Maker00019070
Rhizophoraceae	Rhizophora apiculata	14	nbisL1-mrna-12329, nbisL1-mrna-14972, nbisL1-mrna-17860 ... nbisL1-mrna-17868, nbisL1-mrna-1867, nbisL1-mrna-1868, nbisL1-mrna-19644, nbisL1-mrna-21016, nbisL1-mrna-22161, nbisL1-mrna-23084, nbisL1-mrna-23339, nbisL1-mrna-23340, nbisL1-mrna-23351, nbisL1-mrna-7345
Rhizophoraceae	Rhizophora mangle	78	nbisL1-mrna-10497, nbisL1-mrna-14405, nbisL1-mrna-14406 ... nbisL1-mrna-17159, nbisL1-mrna-17165, nbisL1-mrna-17168, nbisL1-mrna-17169, nbisL1-mrna-17171, nbisL1-mrna-17223, nbisL1-mrna-17229, nbisL1-mrna-19468, nbisL1-mrna-21294, nbisL1-mrna-21295, nbisL1-mrna-21531, nbisL1-mrna-21547, nbisL1-mrna-21548, nbisL1-mrna-21549, nbisL1-mrna-22221, nbisL1-mrna-23182, nbisL1-mrna-23189, nbisL1-mrna-23349, nbisL1-mrna-23350, nbisL1-mrna-23352, nbisL1-mrna-23353, nbisL1-mrna-23373, nbisL1-mrna-23612, nbisL1-mrna-23948, nbisL1-mrna-23949, nbisL1-mrna-23954, nbisL1-mrna-23955, nbisL1-mrna-23965, nbisL1-mrna-23988, nbisL1-mrna-23990, nbisL1-mrna-23995, nbisL1-mrna-23996, nbisL1-mrna-24010, nbisL1-mrna-24016, nbisL1-mrna-24018, nbisL1-mrna-24021, nbisL1-mrna-24022, nbisL1-mrna-24029, nbisL1-mrna-24032, nbisL1-mrna-24033, nbisL1-mrna-24045, nbisL1-mrna-24046, nbisL1-mrna-24052, nbisL1-mrna-24156, nbisL1-mrna-24159, nbisL1-mrna-24161, nbisL1-mrna-24292, nbisL1-mrna-24293, nbisL1-mrna-24294, nbisL1-mrna-24295, nbisL1-mrna-24299, nbisL1-mrna-24303, nbisL1-mrna-24304, nbisL1-mrna-24466, nbisL1-mrna-24467, nbisL1-mrna-24584, nbisL1-mrna-24664, nbisL1-mrna-24814, nbisL1-mrna-24815, nbisL1-mrna-24816, nbisL1-mrna-24819, nbisL1-mrna-24820, nbisL1-mrna-24880, nbisL1-mrna-24892, nbisL1-mrna-24903, nbisL1-mrna-24955, nbisL1-mrna-25119, nbisL1-mrna-25372, nbisL1-mrna-25373, nbisL1-mrna-25455, nbisL1-mrna-3837, nbisL1-mrna-6372, nbisL1-mrna-952, nbisL1-mrna-962, nbisL1-mrna-963
Salicaceae	Populus euphratica	38	populus_peu00838, populus_peu05674, populus_peu05712 ... populus_peu05853, populus_peu11039, populus_peu11059, populus_peu11060, populus_peu11061, populus_peu13189, populus_peu13197, populus_peu13209, populus_peu13233, populus_peu13234, populus_peu13235, populus_peu13236, populus_peu13246, populus_peu13247, populus_peu13248, populus_peu13266, populus_peu13269, populus_peu13279, populus_peu13280, populus_peu13281, populus_peu13282, populus_peu13283, populus_peu13285, populus_peu13286, populus_peu15766, populus_peu22075, populus_peu22076, populus_peu33444, populus_peu33445, populus_peu33446, populus_peu33451, populus_peu33456, populus_peu33457, populus_peu33463, populus_peu37988
Solanaceae	Lycium barbarum	21	gene-LOC132609234, gene-LOC132609328, gene-LOC132614197 ... gene-LOC132615592, gene-LOC132615892, gene-LOC132623029, gene-LOC132629035, gene-LOC132629036, gene-LOC132636961, gene-LOC132636965, gene-LOC132636966, gene-LOC132637860, gene-LOC132637861, gene-LOC132637862, gene-LOC132637864, gene-LOC132637865, gene-LOC132638018, gene-LOC132638019, gene-LOC132638020, gene-LOC132638818, gene-LOC132645719
Solanaceae	Solanum chilense	6	SOLCI000497800, SOLCI001583300, SOLCI002574800 ... SOLCI002574900, SOLCI003129400, SOLCI005252400
Solanaceae	Solanum pennellii	3	gene-LOC107003533, gene-LOC107015745, gene-LOC107017818