Basic Information
Locus ID:
nbisL1-mrna-24763
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 26183379 | 26185872 | - | nbisL1-mrna-24763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 58,236.11 Da | 46.20 | 89.64 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 38 | 70 | 5.3E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 85 | 1.57E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 199 | 400 | 1.61E-12 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 80 | 1.6E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 161 | 454 | 1.3E-12 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 36 | 86 | 9.603447 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80960.5 | - | 0 |
| RefSeq | XP_008242821.1 | - | 0 |
| Q9SAG4 | F-box protein At1g80960 OS=Arabidopsis thaliana OX=3702 GN=At1g80960 PE=2 SV=3 | 0 | |
| TrEMBL | A0A067LNB6 | F-box domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11867 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55900.1 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1166 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.38 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24763, nbisL1-mrna-24764 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.260 |
| Salicaceae | Populus euphratica | 1 | populus_peu04600 |
| Tamaricaceae | Reaumuria soongarica | 14 | MSTRG.13023_chr07_+, MSTRG.13852_chr08_-, MSTRG.4576_chr03_- ... |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1245, TC08G0764 |