Basic Information
Locus ID:
nbisL1-mrna-24722
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000280F_pilon | 50310 | 50935 | - | nbisL1-mrna-24722 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 13,477.23 Da | 33.35 | 86.20 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 45 | 112 | 4.1E-8 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 38 | 114 | 1.4E-5 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 26 | 83 | 6.1E-16 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 84 | 114 | 6.1E-16 | - |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 121 | 11.383467 | IPR001223 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038695413.1 | uncharacterized protein LOC119992692 [Tripterygium wilfordii] | 0 |
| TrEMBL | A0A2N9FKS8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology