Basic Information
Locus ID:
nbisL1-mrna-24720
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000280F_pilon | 30496 | 32221 | - | nbisL1-mrna-24720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 42,162.64 Da | 36.30 | 73.22 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 25 | 361 | 2.65417E-152 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 31 | 355 | 2.3E-84 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 32 | 368 | 9.44E-69 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 262 | 327 | 1.18E-11 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 41 | 357 | 2.2E-113 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 261 | 326 | 2.2E-113 | IPR029070 |
| SMART | SM00636 | 2g34 | 27 | 355 | 1.8E-107 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 27 | 371 | 71.470802 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | B9HAQ4 | GH18 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G188300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology