Basic Information
Locus ID:
nbisL1-mrna-24720
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 25747056 | 25758695 | + | nbisL1-mrna-24720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 96,244.97 Da | 54.54 | 78.41 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 21 | 116 | 1.31694E-11 | - |
| CDD | cd00159 | RhoGAP | 181 | 318 | 2.65214E-34 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 614 | 694 | 2.7E-21 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 2.7E-32 | IPR000198 |
| Pfam | PF00169 | PH domain | 20 | 124 | 5.3E-13 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 16 | 132 | 1.53E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 374 | 1.28E-34 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 9 | 126 | 2.9E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 149 | 374 | 1.2E-42 | IPR008936 |
| SMART | SM00233 | PH_update | 19 | 127 | 8.3E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 178 | 369 | 1.1E-28 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 372 | 30.532949 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.5488 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 567 | - | - |
| Coils | Coil | Coil | 824 | 851 | - | - |
| Coils | Coil | Coil | 663 | 697 | - | - |
| Coils | Coil | Coil | 579 | 599 | - | - |
| Coils | Coil | Coil | 604 | 638 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_021643720.1 | rho GTPase-activating protein 7-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067LGF7 | Rho GTPase-activating protein 7-like OS=Jatropha curcas OX=180498 GN=JCGZ_22776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology