Basic Information
Locus ID:
nbisL1-mrna-24717
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000280F_pilon | 2517 | 3623 | - | nbisL1-mrna-24717 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 39,973.20 Da | 38.31 | 72.15 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 27 | 365 | 1.45443E-147 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 33 | 359 | 4.0E-82 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 265 | 330 | 1.11E-12 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 34 | 361 | 1.41E-67 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 43 | 361 | 2.0E-112 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 264 | 330 | 2.0E-112 | IPR029070 |
| SMART | SM00636 | 2g34 | 29 | 359 | 1.7E-104 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 29 | 368 | 69.831978 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YIX8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology