Basic Information
Locus ID:
nbisL1-mrna-246
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 1983365 | 1988498 | - | nbisL1-mrna-246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 77,056.97 Da | 34.38 | 84.47 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 308 | 492 | 1.5E-47 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 574 | 679 | 5.4E-11 | IPR041147 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 70 | 7.46E-8 | IPR036047 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 305 | 682 | 2.04E-114 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1360 | - | 564 | 682 | 9.6E-36 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 288 | 540 | 6.5E-96 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 0.0045 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 107 | 199 | 8.2E-13 | IPR017451 |
| Coils | Coil | Coil | 621 | 641 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.3 | - | 0 |
| RefSeq | XP_034890553.1 | - | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067LFA1 | Alpha-mannosidase OS=Jatropha curcas OX=180498 GN=JCGZ_22737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology