Basic Information
Locus ID:
nbisL1-mrna-24577
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 24728916 | 24730113 | - | nbisL1-mrna-24577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 39,717.18 Da | 73.15 | 55.99 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 162 | 203 | 6.38482E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 231 | 343 | 4.2E-30 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 161 | 203 | 1.6E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 5 | 36 | 4.4E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 209 | 4.42E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 209 | 2.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 162 | 202 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 162 | 203 | 11.972923 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 86 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021604963.1 | E3 ubiquitin-protein ligase RDUF1 [Manihot esculenta] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NYS7 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology