Basic Information
Locus ID:
nbisL1-mrna-24550
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 24520092 | 24523230 | + | nbisL1-mrna-24550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 24,914.32 Da | 55.83 | 74.23 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 156 | 199 | 2.6893E-16 | - |
| Pfam | PF17123 | RING-like zinc finger | 84 | 110 | 1.5E-8 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 156 | 199 | 9.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 202 | 4.35E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 84 | 110 | 7.57E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 204 | 1.6E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 119 | 8.1E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 85 | 110 | 12.0 | IPR001841 |
| SMART | SM00184 | ring_2 | 157 | 198 | 6.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 199 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 70 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44578.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022772101.1 | - | 0 |
| Q940Q4 | RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6P6B596 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology