Basic Information
Locus ID:
nbisL1-mrna-24538
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 24433442 | 24438913 | - | nbisL1-mrna-24538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 72,111.40 Da | 46.22 | 94.55 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 265 | 307 | 5.49809E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 471 | 509 | 1.1E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 388 | 427 | 4.4E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 553 | 592 | 2.1E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 261 | 331 | 5.8E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 337 | 1.46E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 359 | 635 | 9.98E-51 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 121 | 8.0E-12 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 476 | 643 | 1.5E-28 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 359 | 475 | 1.0E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 334 | 1.2E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 552 | 592 | 23.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 264 | 327 | 1.3E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 429 | 469 | 4.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 511 | 551 | 11.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 388 | 428 | 1.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 470 | 510 | 1.2 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 522 | 564 | 8.9774 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 399 | 441 | 12.4774 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 334 | 44.990997 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 668 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_012065019.1 | U-box domain-containing protein 13 [Jatropha curcas] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYI5 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology