Basic Information
Locus ID:
nbisL1-mrna-24445
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 23626644 | 23635505 | - | nbisL1-mrna-24445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 69,980.07 Da | 49.09 | 83.91 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 233 | 507 | 3.18984E-92 | - |
| Pfam | PF00069 | Protein kinase domain | 229 | 505 | 6.8E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 207 | 507 | 1.29E-74 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 199 | 307 | 9.4E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 308 | 524 | 1.9E-56 | - |
| SMART | SM00220 | serkin_6 | 227 | 510 | 1.0E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 227 | 510 | 36.145599 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 233 | 255 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 352 | 364 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28250.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021627076.1 | receptor-like serine/threonine-protein kinase NCRK [Manihot esculenta] | 0 |
| Q8VYY5 | Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana OX=3702 GN=NCRK PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JT22 | Uncharacterized protein MANES_11G147400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35900, jg8246 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20820 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2615, Sbi_jg60085 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24269 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015880 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl78486, Sgl78511, Sgl80982, Sgl80983 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019740, gene:ENSEOMG00000039394 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0004450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30058420 |
| Apiaceae | Apium graveolens | 1 | Ag11G04292 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718262 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2034.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G30873 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016449m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11060.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g017080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1685 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1727 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g00150 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g24780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-546 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.890 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014590 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.138, BH07.67, CH03.4761 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0098970, gene-QOZ80_2BG0152420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0542970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019457 |
| Poaceae | Oryza coarctata | 2 | Oco03G000520, Oco04G000520 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g02040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G007900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200904, Pt_Chr0200905 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G010340 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G080100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC6AG003370, gene_TRIDC6AG003380 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6B02G039900.1, TraesCS6D02G031600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229650_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52324 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14821 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1205, evm.TU.LG21.837 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.387, evm.TU.Scaffold_13_RagTag.691 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24357, nbisL1-mrna-24445, nbisL1-mrna-30362 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2375, nbisL1-mrna-791 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16076, nbisL1-mrna-19653 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.396, evm.TU.utg000027l.338 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015702, Maker00018098 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4316, nbisL1-mrna-5648 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11872, nbisL1-mrna-15101 |
| Salicaceae | Populus euphratica | 3 | populus_peu08357, populus_peu35469, populus_peu35470 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600397 |
| Solanaceae | Solanum chilense | 1 | SOLCI005954600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005050 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1437 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22310.v3.1 |