Basic Information
Locus ID:
nbisL1-mrna-24381
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 23007534 | 23010360 | - | nbisL1-mrna-24381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 37,210.60 Da | 51.40 | 72.72 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 278 | 318 | 6.66069E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 277 | 323 | 3.0E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 278 | 324 | 1.94E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 264 | 328 | 3.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 279 | 317 | 4.4E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 6 | 59 | 1500.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 254 | 329 | 1.0E-8 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 279 | 318 | 11.323791 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021628088.1 | probable E3 ubiquitin-protein ligase LOG2 [Manihot esculenta] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IZ71 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology