Basic Information
Locus ID:
nbisL1-mrna-24363
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002237F_pilon | 16980 | 19542 | - | nbisL1-mrna-24363 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 89,011.32 Da | 32.85 | 105.56 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 254 | 313 | 2.1E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 669 | 711 | 1.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 108 | 169 | 1.0E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 71 | 2.6E-9 | IPR013210 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 537 | 577 | 7.9E-7 | IPR025875 |
| SUPERFAMILY | SSF52058 | L domain-like | 56 | 362 | 4.76E-53 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 379 | 713 | 1.49E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 468 | 750 | 3.9E-78 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 314 | 1.5E-71 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 316 | 467 | 1.6E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 132 | 156 | 90.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 650 | 673 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 674 | 697 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 180 | 204 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 276 | 300 | 20.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 674 | 700 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 559 | 582 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 131 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 228 | 252 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 698 | 721 | 270.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 156 | 179 | 390.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 559 | 585 | 730.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 204 | 230 | 460.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 252 | 281 | 21.0 | - |
| SMART | SM00369 | LRR_typ_2 | 512 | 536 | 320.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 300 | 321 | 260.0 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 159 | 172 | 1.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 559 | 572 | 1.8E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_021652492.1 | leucine-rich repeat receptor protein kinase EMS1-like isoform X1 [Hevea brasiliensis] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A836XSV8 | LRR receptor serine/threonine-protein kinase OS=Salix suchowensis OX=1278906 GN=IMY05_016G0001900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |