Basic Information
Locus ID:
nbisL1-mrna-2435
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 5943807 | 5955640 | + | nbisL1-mrna-2435 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 135,764.94 Da | 35.02 | 86.48 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 281 | 557 | 1.53962E-177 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 1113 | 1218 | 1.8E-11 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 819 | 1031 | 3.8E-53 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 282 | 593 | 1.5E-90 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 270 | 594 | 1.87E-110 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 597 | 631 | 1.44E-7 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 646 | 1221 | 5.49E-145 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1180 | - | 684 | 809 | 1.2E-23 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 562 | 641 | 1.5E-26 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 1100 | 1221 | 2.8E-35 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 816 | 1079 | 8.3E-101 | - |
| Gene3D | G3DSA:1.10.287.3990 | - | 56 | 114 | 9.4E-12 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 281 | 561 | 1.1E-119 | IPR027291 |
| SMART | SM00726 | uim | 128 | 147 | 14.0 | IPR003903 |
| SMART | SM00726 | uim | 96 | 115 | 1.3 | IPR003903 |
| SMART | SM00726 | uim | 58 | 77 | 1.8 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 96 | 115 | 9.424373 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 58 | 77 | 10.306891 | IPR003903 |
| Coils | Coil | Coil | 1160 | 1180 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_021676963.1 | alpha-mannosidase-like isoform X1 [Hevea brasiliensis] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6KTS5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology