Basic Information
Locus ID:
nbisL1-mrna-2432
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 3123019 | 3125256 | + | nbisL1-mrna-2432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 82,858.83 Da | 31.67 | 89.18 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 564 | 613 | 4.3E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 365 | 409 | 7.8E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 269 | 314 | 3.1E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 169 | 198 | 5.4E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 239 | 262 | 0.26 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 138 | 165 | 0.017 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 466 | 492 | 0.3 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 438 | 459 | 0.085 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 33 | 206 | 3.0E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 215 | 320 | 1.8E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 598 | 743 | 4.9E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 478 | 597 | 3.8E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 321 | 416 | 1.5E-16 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 368 | 402 | 2.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 169 | 201 | 1.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 270 | 296 | 1.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 567 | 601 | 2.5E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 605 | 636 | 0.0022 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 601 | 636 | 8.516988 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 565 | 600 | 10.533867 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 366 | 400 | 10.566751 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 166 | 200 | 10.347525 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 268 | 302 | 11.816339 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49740.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021632354.1 | pentatricopeptide repeat-containing protein At3g49740 [Manihot esculenta] | 0 |
| Q9M2Y4 | Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E84 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9UQI5 | Pentatricopeptide repeat-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G108400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30734 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16765 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027500 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g128540, BVRB_6g128580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13215, Sbi_jg52603 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9214 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010092 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34551, Sgl39966 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000000450, gene:ENSEOMG00000027756 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30204700, pistato.v30204710 |
| Apiaceae | Apium graveolens | 2 | Ag9G00075, AgUnG01470 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G007320 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721431 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3888.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G01128 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010148m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g075510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0443 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0460 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6681 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2605 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1610, evm.TU.LG12.281 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1177 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-792 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2432 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.237 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19235 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1871 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640585 |
| Solanaceae | Solanum chilense | 1 | SOLCI004421600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018860 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25187_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3545 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01920.v3.1 |