Basic Information
Locus ID:
nbisL1-mrna-243
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 291127 | 298395 | + | nbisL1-mrna-243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 152,752.95 Da | 46.17 | 85.18 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 1035 | 1059 | 0.00227124 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 738 | 913 | 1.6249E-48 | - |
| CDD | cd18793 | SF2_C_SNF | 1181 | 1288 | 1.76166E-22 | - |
| Pfam | PF07496 | CW-type Zinc Finger | 560 | 602 | 2.6E-13 | IPR011124 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 304 | 955 | 3.0E-95 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1178 | 1278 | 6.3E-9 | IPR001650 |
| Pfam | PF00646 | F-box domain | 256 | 290 | 0.0011 | IPR001810 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 813 | 1304 | 4.16E-31 | IPR027417 |
| SUPERFAMILY | SSF81383 | F-box domain | 248 | 290 | 8.76E-8 | IPR036047 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 737 | 908 | 1.62E-20 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 291 | 382 | 5.0E-8 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1093 | 1338 | 1.7E-26 | IPR027417 |
| Gene3D | G3DSA:3.30.40.100 | - | 556 | 606 | 8.9E-15 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 725 | 916 | 8.0E-24 | IPR038718 |
| SMART | SM00487 | ultradead3 | 297 | 883 | 3.0E-11 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1196 | 1278 | 1.1E-5 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1163 | 1313 | 9.966175 | IPR001650 |
| ProSiteProfiles | PS51050 | Zinc finger CW-type profile. | 555 | 605 | 12.614811 | IPR011124 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 741 | 872 | 10.80459 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1050 | 1059 | - | IPR017907 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54460.1 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein. | 0 |
| RefSeq | XP_021683938.1 | F-box protein At3g54460 [Hevea brasiliensis] | 0 |
| Q9M1I1 | F-box protein At3g54460 OS=Arabidopsis thaliana OX=3702 GN=At3g54460 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2INB3 | F-box protein At3g54460 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1541 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17169 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032391 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29962, Sbi_jg43425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18477 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66254, Sgl70570 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014745, gene:ENSEOMG00000020728 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0004420, CQ.Regalona.r1.2BG0005620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165940 |
| Apiaceae | Apium graveolens | 3 | Ag11G04173, Ag7G01712, Ag8G01535 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701638 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G08566 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010067m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g065390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0876 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0889 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09600 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0022s00035.v1.0, Dusal.0193s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1984 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014812 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02355 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4531, BH02.4584, CH02.4635 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0046780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0320710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058087 |
| Poaceae | Oryza coarctata | 2 | Oco01G030060, Oco02G031210 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G403500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403035 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G000930, Chr05G033740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G794500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG069780, gene_TRIDC3BG078800 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G543900.1, TraesCS3D02G490000.1 |
| Poaceae | Zea mays | 2 | Zm00001eb140810_P001, Zm00001eb140820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10822 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9386 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.383, evm.TU.LG17.379, evm.TU.LG25.65 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.57 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7154 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13637 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14504, nbisL1-mrna-14505 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.345 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010191 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-243 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22075 |
| Salicaceae | Populus euphratica | 1 | populus_peu35074 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615369 |
| Solanaceae | Solanum chilense | 1 | SOLCI001589500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004568 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14390 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3892 |
| Zosteraceae | Zostera marina | 1 | Zosma02g16880.v3.1 |