Basic Information
Locus ID:
nbisL1-mrna-24270
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 21978714 | 21981131 | - | nbisL1-mrna-24270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 59,643.59 Da | 36.23 | 90.04 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 277 | 0.0092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 150 | 184 | 0.084 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 470 | 4.76E-42 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 59 | 136 | 2.62E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 58 | 139 | 4.7E-8 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 140 | 309 | 3.6E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 310 | 492 | 6.1E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 241 | 277 | 0.0024 | IPR001680 |
| SMART | SM00256 | fbox_2 | 65 | 105 | 0.003 | IPR001810 |
| SMART | SM00320 | WD40_4 | 367 | 404 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 184 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 318 | 358 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 315 | 0.72 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 468 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 224 | 350.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 286 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 152 | 193 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 152 | 188 | 10.521959 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 59 | 105 | 10.504256 | IPR001810 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 171 | 185 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21040.1 | F-box protein 2. Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. | 0 |
| RefSeq | XP_025013563.1 | - | 0 |
| Q94AD8 | F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana OX=3702 GN=At5g21040 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IRK2 | Uncharacterized protein MANES_04G055500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16387, jg35637, jg37661, jg37662 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5763 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1512, Sbi_jg35042 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3235 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003410 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72669, Sgl76207 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008006, gene:ENSEOMG00000037346 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004830, CQ.Regalona.r1.9BG0000940 |
| Apiaceae | Apium graveolens | 2 | Ag1G01044, Ag9G01509 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G018070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713828 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.29.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G29475 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G21040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016076m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23500.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g041850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1496 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1483 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0204s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g05550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2379 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.25 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013800, Pov_00015757 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20230 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.2322, BH09.2519 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0303630, gene-QOZ80_4BG0334540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195200.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_071908 |
| Poaceae | Oryza coarctata | 1 | Oco07G016180 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g52870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G232000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G004580, Chr25G002940, Chr26G015810, Chr30G002890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G783500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065800, gene_TRIDC2BG070850 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G463100.1.cds1, TraesCS2B02G484800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb431140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22891 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20467 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1794, evm.TU.LG14.83 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g29100 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.475, evm.TU.Scaffold_13_RagTag.585 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24270, nbisL1-mrna-30485 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12910 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15969 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.126, add.evm.TU.utg000027l.127 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017827 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18418 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15207 |
| Salicaceae | Populus euphratica | 1 | populus_peu36843 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600737, gene-LOC132603521 |
| Solanaceae | Solanum chilense | 2 | SOLCI002704600, SOLCI007372400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005029, gene-LOC107021055 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6432 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1164 |
| Zosteraceae | Zostera marina | 1 | Zosma01g42530.v3.1 |