Basic Information
Locus ID:
nbisL1-mrna-24241
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 21727143 | 21733470 | + | nbisL1-mrna-24241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 176,178.72 Da | 36.80 | 108.64 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 618 | 821 | 8.44273E-87 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 278 | 565 | 4.97756E-86 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1292 | 1512 | 2.10703E-123 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 919 | 1269 | 7.40939E-50 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 281 | 544 | 1.5E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 924 | 1173 | 1.6E-20 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 618 | 748 | 6.9E-14 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1311 | 1459 | 7.8E-32 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1284 | 1520 | 2.41E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 921 | 1274 | 5.23E-36 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 617 | 837 | 2.15E-42 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 270 | 572 | 3.79E-27 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 886 | 1275 | 1.6E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 615 | 875 | 1.5E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1277 | 1530 | 1.0E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 247 | 575 | 3.6E-41 | IPR036640 |
| SMART | SM00382 | AAA_5 | 622 | 829 | 1.9E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1320 | 1505 | 4.3E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 921 | 1214 | 27.267979 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 277 | 557 | 29.429871 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1294 | 1528 | 18.98772 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 590 | 845 | 17.400427 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 721 | 735 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034914533.1 | putative ABC transporter C family member 15 [Populus alba] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4V6ABI6 | ABC-type xenobiotic transporter OS=Populus alba OX=43335 GN=D5086_0000060630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology