Basic Information
Locus ID:
nbisL1-mrna-24172
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 21076189 | 21078251 | - | nbisL1-mrna-24172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 52,480.22 Da | 51.77 | 73.30 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 318 | 352 | 1.0E-7 | IPR005174 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 55 | 4.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 451 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68960.1 | Protein of unknown function (DUF295). | 0 |
| RefSeq | XP_021838302.1 | F-box protein At2g26160-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9QU58 | DUF295 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_147950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1491 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-20646, nbisL1-mrna-20648, nbisL1-mrna-20649 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21479 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.941 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009936 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12041, nbisL1-mrna-4590, nbisL1-mrna-4591 |