Basic Information
Locus ID:
nbisL1-mrna-24087
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001741F_pilon | 256247 | 258147 | - | nbisL1-mrna-24087 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 65,533.12 Da | 49.89 | 61.05 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 255 | 298 | 2.7E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 170 | 233 | 1.3E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 240 | 1.13E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 305 | 4.94E-15 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 538 | 562 | 3.69E-5 | IPR036443 |
| Gene3D | G3DSA:1.20.120.1750 | - | 229 | 472 | 1.6E-72 | - |
| SMART | SM00647 | ibrneu5 | 237 | 302 | 0.0091 | IPR002867 |
| SMART | SM00547 | zf_4 | 537 | 561 | 4.3E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 513 | 536 | 0.13 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 170 | 233 | 2.4E-20 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 76 | 306 | 32.754139 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 535 | 564 | 8.366031 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 539 | 558 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_034887515.1 | probable E3 ubiquitin-protein ligase ARI8 [Populus alba] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2NHI9 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology